Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f15
         (814 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3472|AAS65085.1|  558|Drosophila melanogaster CG33486-P...   194   1e-49
AY058298-1|AAL13527.1|  659|Drosophila melanogaster GH05975p pro...    31   2.5  
AE014134-1092|AAF52383.2|  659|Drosophila melanogaster CG9528-PA...    31   2.5  
BT022710-1|AAY55126.1|  275|Drosophila melanogaster IP07622p pro...    30   4.3  
BT022643-1|AAY55059.1|  275|Drosophila melanogaster IP07722p pro...    30   4.3  
AE014297-849|AAF54317.2|  254|Drosophila melanogaster CG11977-PA...    30   4.3  
AE014134-306|AAS64628.1| 1101|Drosophila melanogaster CG31665-PB...    29   7.6  

>AE014296-3472|AAS65085.1|  558|Drosophila melanogaster CG33486-PA
            protein.
          Length = 558

 Score =  194 bits (473), Expect = 1e-49
 Identities = 108/266 (40%), Positives = 159/266 (59%), Gaps = 18/266 (6%)
 Frame = -3

Query: 806  AARTVADYLGTEHHEVQFDENDIRKDLDNVIYHLESYDITTIRASLPMYLLSKYIKEKTD 627
            AAR+VA Y+ ++H E+ F+ ++    + ++IYHLE+YD+TT+R SLPM LL++YIK  T 
Sbjct: 288  AARSVAKYIDSDHKEIIFEIDEALDGIRDIIYHLETYDVTTVRCSLPMLLLARYIKS-TG 346

Query: 626  TTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLELR 447
              ++ SGEGADE+  GY+YF  APS  D H+E V+ +  ++L D LRA++   A  +ELR
Sbjct: 347  IKMILSGEGADEIFGGYLYFHKAPSYNDFHEELVKRVRQLHLSDCLRANKVAMAKGVELR 406

Query: 446  VPFLDIQFTHHYLSIPPKLRQP----------QNGVEKHLLRSSFAKSGLLPDCVLWRHK 297
            VPFLD  F +H + I P+ + P          Q  +EK++LR++FA    LPD VLWR K
Sbjct: 407  VPFLDTGFVNHVMQIRPEDKIPGPLNKFGEVQQKRLEKYVLRAAFA-DNYLPDEVLWRQK 465

Query: 296  EAFSDGVSSVKKSLFSVIKEITTERLQEDD-----IQYPGLQPKTNESKYYRYVFEKSFP 132
            E FSDGV          I+ + T  + + +     +++P   P T E+ YYR +F + FP
Sbjct: 466  EQFSDGVG---YDWIDSIRRVATSHVSDQEFSAAALRFPFNTPTTKEAFYYRCIFAEQFP 522

Query: 131  GQHNF-TPYYWMPK--WVQVSDPSAR 63
            G+    T   W+P+  W    DPS R
Sbjct: 523  GESAARTVVRWVPRLDWGCPEDPSGR 548


>AY058298-1|AAL13527.1|  659|Drosophila melanogaster GH05975p
           protein.
          Length = 659

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 698 YDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVR 522
           +D+        +Y +++ + EK D+ V +      +  +G  YFR+ P+    HKESV+
Sbjct: 544 FDVMRNDLHFTLYRVTQELPEKNDSAVSYFD--LQDFVEGVNYFREEPTLICRHKESVQ 600


>AE014134-1092|AAF52383.2|  659|Drosophila melanogaster CG9528-PA
           protein.
          Length = 659

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 698 YDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVR 522
           +D+        +Y +++ + EK D+ V +      +  +G  YFR+ P+    HKESV+
Sbjct: 544 FDVMRNDLHFTLYRVTQELPEKNDSAVSYFD--LQDFVEGVNYFREEPTLICRHKESVQ 600


>BT022710-1|AAY55126.1|  275|Drosophila melanogaster IP07622p
           protein.
          Length = 275

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 331 DYCQTVCCGDTKKHLVMVCLQLKNRCSRS*KRSQLKDYKKTIY-NIQDCSRK 179
           DYC    C   KKH+         +C R+ +  ++ DY+  I  N+ +  RK
Sbjct: 44  DYCNADICPANKKHITCGFKFWSTKCGRNHEGVRMSDYRYDIVRNVNNFRRK 95


>BT022643-1|AAY55059.1|  275|Drosophila melanogaster IP07722p
           protein.
          Length = 275

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 331 DYCQTVCCGDTKKHLVMVCLQLKNRCSRS*KRSQLKDYKKTIY-NIQDCSRK 179
           DYC    C   KKH+         +C R+ +  ++ DY+  I  N+ +  RK
Sbjct: 44  DYCNADICPANKKHITCGFKFWSTKCGRNHEGVRMSDYRYDIVRNVNNFRRK 95


>AE014297-849|AAF54317.2|  254|Drosophila melanogaster CG11977-PA
           protein.
          Length = 254

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 331 DYCQTVCCGDTKKHLVMVCLQLKNRCSRS*KRSQLKDYKKTIY-NIQDCSRK 179
           DYC    C   KKH+         +C R+ +  ++ DY+  I  N+ +  RK
Sbjct: 23  DYCNADICPANKKHITCGFKFWSTKCGRNHEGVRMSDYRYDIVRNVNNFRRK 74


>AE014134-306|AAS64628.1| 1101|Drosophila melanogaster CG31665-PB,
            isoform B protein.
          Length = 1101

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 169  DSFVFGCSPGYCISSSCNLSVVISFMTENNDFLTEDTPSLN 291
            DSF   C PGY   + C    V+  +  +++F+ +D  + N
Sbjct: 898  DSFYCACRPGY-TGTMCEDEFVVETVVSSSEFIVDDANARN 937


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,792,355
Number of Sequences: 53049
Number of extensions: 717129
Number of successful extensions: 2028
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2025
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3818998872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)