Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17f15
(814 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41034-5|AAA82381.1| 567|Caenorhabditis elegans Hypothetical pr... 200 1e-51
U41034-6|AAU05557.1| 538|Caenorhabditis elegans Hypothetical pr... 198 5e-51
AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl t... 153 1e-37
L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical pr... 34 0.14
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 32 0.42
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 32 0.42
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 32 0.42
Z68116-3|CAA92175.1| 178|Caenorhabditis elegans Hypothetical pr... 29 5.2
U41034-7|AAN72427.1| 465|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z70036-5|CAO78725.1| 712|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical pr... 28 9.1
M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein ( C.ele... 28 9.1
>U41034-5|AAA82381.1| 567|Caenorhabditis elegans Hypothetical protein
M02D8.4a protein.
Length = 567
Score = 200 bits (487), Expect = 1e-51
Identities = 111/260 (42%), Positives = 156/260 (60%), Gaps = 10/260 (3%)
Frame = -3
Query: 812 LAAARTVADYLGTEHHEVQFDENDIRKDLDNVIYHLESYDITTIRASLPMYLLSKYIKEK 633
+ AAR VA ++GT HHE F + K+L +I+HLESYD+T+IRAS PMY LS+ I+ K
Sbjct: 274 VVAARKVAKFIGTTHHEFYFSIEEGIKNLRKLIWHLESYDVTSIRASTPMYFLSEEIR-K 332
Query: 632 TDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLE 453
VV SGEGADE+ GY+YF +APS++D KE++ + +Y D LRAD+++ A S+E
Sbjct: 333 LGIKVVLSGEGADEIFGGYLYFHNAPSDEDFQKETIDRVLHLYTSDCLRADKSSMAHSVE 392
Query: 452 LRVPFLDIQFTHHYLSIPPKLRQPQ-----NGVEKHLLRSSF--AKSGLLPDCVLWRHKE 294
+RVPFLD F +S+ P ++PQ EK +LRS+F + LPD +LWR KE
Sbjct: 393 VRVPFLDKAFVEAAVSLDPAFKRPQKLEDGRNCEKFVLRSAFNTDQYPYLPDEILWRQKE 452
Query: 293 AFSDGV--SSVKKSLFSVIKEITTERLQEDDIQYPGLQPKTNESKYYRYVFEKSFPG-QH 123
FSDGV S + + +IT + + +P P + E+ Y R +F + FP Q
Sbjct: 453 QFSDGVGYSWIDTLMKYCAAKITDKEFSQASKLFPHNTPHSKEAFYMRKIFHEQFPSEQA 512
Query: 122 NFTPYYWMPKWVQVSDPSAR 63
T W+PKW + DPS R
Sbjct: 513 ALTVRKWIPKWQKNQDPSGR 532
>U41034-6|AAU05557.1| 538|Caenorhabditis elegans Hypothetical protein
M02D8.4c protein.
Length = 538
Score = 198 bits (482), Expect = 5e-51
Identities = 110/258 (42%), Positives = 155/258 (60%), Gaps = 10/258 (3%)
Frame = -3
Query: 812 LAAARTVADYLGTEHHEVQFDENDIRKDLDNVIYHLESYDITTIRASLPMYLLSKYIKEK 633
+ AAR VA ++GT HHE F + K+L +I+HLESYD+T+IRAS PMY LS+ I+ K
Sbjct: 274 VVAARKVAKFIGTTHHEFYFSIEEGIKNLRKLIWHLESYDVTSIRASTPMYFLSEEIR-K 332
Query: 632 TDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLE 453
VV SGEGADE+ GY+YF +APS++D KE++ + +Y D LRAD+++ A S+E
Sbjct: 333 LGIKVVLSGEGADEIFGGYLYFHNAPSDEDFQKETIDRVLHLYTSDCLRADKSSMAHSVE 392
Query: 452 LRVPFLDIQFTHHYLSIPPKLRQPQ-----NGVEKHLLRSSF--AKSGLLPDCVLWRHKE 294
+RVPFLD F +S+ P ++PQ EK +LRS+F + LPD +LWR KE
Sbjct: 393 VRVPFLDKAFVEAAVSLDPAFKRPQKLEDGRNCEKFVLRSAFNTDQYPYLPDEILWRQKE 452
Query: 293 AFSDGV--SSVKKSLFSVIKEITTERLQEDDIQYPGLQPKTNESKYYRYVFEKSFPG-QH 123
FSDGV S + + +IT + + +P P + E+ Y R +F + FP Q
Sbjct: 453 QFSDGVGYSWIDTLMKYCAAKITDKEFSQASKLFPHNTPHSKEAFYMRKIFHEQFPSEQA 512
Query: 122 NFTPYYWMPKWVQVSDPS 69
T W+PKW + DPS
Sbjct: 513 ALTVRKWIPKWQKNQDPS 530
>AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl trna
synthetase protein2 protein.
Length = 551
Score = 153 bits (371), Expect = 1e-37
Identities = 86/229 (37%), Positives = 127/229 (55%), Gaps = 3/229 (1%)
Frame = -3
Query: 812 LAAARTVADYLGTEHHEVQFDENDIRKDLDNVIYHLESYDITTIRASLPMYLLSKYIKEK 633
L A+ VADYL H + + V++ LE++D IR + YLL ++I +
Sbjct: 269 LENAKKVADYLKIPHEVLVITPQQCIDIIPEVVFALETFDPLIIRCGIAHYLLCQHISKS 328
Query: 632 TDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLE 453
+D V+ SGEGADEL Y Y + AP+ HKE +R + ++ YD LR DR+TS LE
Sbjct: 329 SDVKVLLSGEGADELFGSYAYMQRAPNALHLHKEILRRMHHLHQYDVLRCDRSTSCHGLE 388
Query: 452 LRVPFLDIQFTHHYLSIPPKLRQPQNGVEKHLLRSSFAKSGLLPDCVLWRHKEAFSD--G 279
+RVPFLD +F +PP + +EKH+LRS+F G LPD VLWR KE F++ G
Sbjct: 389 IRVPFLDKRFIDLVSRLPPSYKLMPMKLEKHVLRSAF--EGWLPDEVLWRSKEGFAEALG 446
Query: 278 VSSVKKSLFSVIKEITTERLQEDDIQ-YPGLQPKTNESKYYRYVFEKSF 135
+ + L ++ ++ L E + +P P+T E +YR +FE +F
Sbjct: 447 KTDLGDILAEHCDKLISKSLYERRAERFPDRTPETTEEYWYRQIFEDTF 495
>L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical
protein C06E1.8 protein.
Length = 397
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 673 VCQCTFCQSILKKKQTQQWYLAEKEPMN*RKAISTSE---THRLKRTHIKRAYVC 518
+C FC S + Q + + RK IS+SE TH K+ HI R Y+C
Sbjct: 55 ICSKVFCHSSSLSRHRMQAHFKSYKCTVCRKDISSSESLRTHMFKQHHISRMYMC 109
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -3
Query: 572 YFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLELRVPFLDIQFTHHYLSIPPK 393
Y RD +E + ++ +R SD L RAD+ ++F+ + DI +TH +PP
Sbjct: 1348 YRRDPLTEPPSMEDCIRAHSDPNLPPHPRADQYPASFTRPMVEYCEDIYWTHRTGQLPPG 1407
Query: 392 LRQPQ 378
L+ P+
Sbjct: 1408 LQVPR 1412
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -3
Query: 572 YFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLELRVPFLDIQFTHHYLSIPPK 393
Y RD +E + ++ +R SD L RAD+ ++F+ + DI +TH +PP
Sbjct: 1348 YRRDPLTEPPSMEDCIRAHSDPNLPPHPRADQYPASFTRPMVEYCEDIYWTHRTGQLPPG 1407
Query: 392 LRQPQ 378
L+ P+
Sbjct: 1408 LQVPR 1412
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -3
Query: 572 YFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLELRVPFLDIQFTHHYLSIPPK 393
Y RD +E + ++ +R SD L RAD+ ++F+ + DI +TH +PP
Sbjct: 1348 YRRDPLTEPPSMEDCIRAHSDPNLPPHPRADQYPASFTRPMVEYCEDIYWTHRTGQLPPG 1407
Query: 392 LRQPQ 378
L+ P+
Sbjct: 1408 LQVPR 1412
>Z68116-3|CAA92175.1| 178|Caenorhabditis elegans Hypothetical
protein F42F12.4 protein.
Length = 178
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = -3
Query: 782 LGTEHHEVQFDENDIRKDLDNVI--YHLESYD-ITTIRASLPMY 660
+G E +V FD+ +++DLD +I Y + +D + RA++P +
Sbjct: 33 IGVECTKVNFDDEHVQEDLDRLIKKYDMNFHDEVHICRATMPNF 76
>U41034-7|AAN72427.1| 465|Caenorhabditis elegans Hypothetical
protein M02D8.4b protein.
Length = 465
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 812 LAAARTVADYLGTEHHEVQF 753
+ AAR VA ++GT HHE F
Sbjct: 274 VVAARKVAKFIGTTHHEFYF 293
>Z70036-5|CAO78725.1| 712|Caenorhabditis elegans Hypothetical
protein T01B4.2c protein.
Length = 712
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 680 RASLPMYLLSKYIKEKTDTTVVFSGEGAD 594
+ S M LL KYI++K +V+FS + AD
Sbjct: 17 QTSQAMKLLEKYIRKKYRHSVIFSQDSAD 45
>Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical
protein T01B4.2b protein.
Length = 733
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 680 RASLPMYLLSKYIKEKTDTTVVFSGEGAD 594
+ S M LL KYI++K +V+FS + AD
Sbjct: 38 QTSQAMKLLEKYIRKKYRHSVIFSQDSAD 66
>Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical
protein T01B4.2a protein.
Length = 757
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 680 RASLPMYLLSKYIKEKTDTTVVFSGEGAD 594
+ S M LL KYI++K +V+FS + AD
Sbjct: 62 QTSQAMKLLEKYIRKKYRHSVIFSQDSAD 90
>M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein (
C.elegans heat shockprotein 70A gene, complete cds. ).
Length = 640
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 205 ISSSCNLSVVISFMTENNDFLTEDTPSLNASLCRHSTQSGNNPL 336
+SSSC S+ I + E DF T T + LC +S +P+
Sbjct: 275 LSSSCQASIEIDSLFEGIDFYTNITRARFEELCADLFRSTMDPV 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,224,248
Number of Sequences: 27780
Number of extensions: 389731
Number of successful extensions: 1211
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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