Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f08
         (860 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006A1ADD Cluster: UPI00006A1ADD related cluster; n...    35   2.3  
UniRef50_A5PLB8 Cluster: Zgc:165515 protein; n=2; Danio rerio|Re...    33   7.0  
UniRef50_Q17EK3 Cluster: Putative uncharacterized protein; n=1; ...    33   7.0  
UniRef50_A4EPJ3 Cluster: Putative uncharacterized protein; n=1; ...    33   9.3  

>UniRef50_UPI00006A1ADD Cluster: UPI00006A1ADD related cluster; n=2;
           Xenopus tropicalis|Rep: UPI00006A1ADD UniRef100 entry -
           Xenopus tropicalis
          Length = 932

 Score = 35.1 bits (77), Expect = 2.3
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -3

Query: 594 EIRRKFVSVKARRTEHMYLPKTHLFRCYECN--WESEELW*CYLECHESKLLFVCVDCDS 421
           E R+ F  V   +  ++       F C EC     S+E    +L CH  +  F C +CD 
Sbjct: 33  ECRKSFAQVGQLKAHYLIHTGEKPFACSECGKGLRSKEALRAHLLCHTGEKPFSCSECDK 92

Query: 420 RFR 412
            FR
Sbjct: 93  SFR 95


>UniRef50_A5PLB8 Cluster: Zgc:165515 protein; n=2; Danio rerio|Rep:
           Zgc:165515 protein - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 325

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 534 KTHLFRCYEC--NWESEELW*CYLECHESKLLFVCVDCDSRF 415
           K   F+C  C  ++ SE ++ C+++CH  +  + C  C   F
Sbjct: 263 KKRTFKCQVCGKDFSSENVFNCHMKCHRIEKPYTCAQCQRNF 304


>UniRef50_Q17EK3 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 381

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
 Frame = -3

Query: 666 TESNLKSHHVFYSYPNFSVARQRYEIRRKFVSVKARRTEHMYLPKTHLFRCYECNWESEE 487
           T S LK H      P   V  Q  E  +  ++ +  +  HM L +   + C  C++++++
Sbjct: 169 TSSGLKEHMRTIHQPQEKVLVQCPECSKWLMNSRCLKI-HMQLHRKDDYECDLCDYKTKK 227

Query: 486 ---LW*CYLECHESKLLFVCVDCDSRFR*H*LACFDRQRRHISFPGSCSCKVFCER 328
              L   ++  H+ +  F C +CD  F+        +  +H        C  FC+R
Sbjct: 228 APLLKRHHITHHQQERPFACDECDKTFKHKRALTIHKGTKHTGDSNGFKCN-FCDR 282


>UniRef50_A4EPJ3 Cluster: Putative uncharacterized protein; n=1;
           Roseobacter sp. SK209-2-6|Rep: Putative uncharacterized
           protein - Roseobacter sp. SK209-2-6
          Length = 326

 Score = 33.1 bits (72), Expect = 9.3
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 103 LNCRYRMIGICV**KNARIPITIYNNNNRREDEVASRDTNQRR 231
           L+ ++R+ G  +  K  R+P+ IY+N N+RE+     D N ++
Sbjct: 108 LDGQHRVFGFALAKKTLRVPVVIYDNLNKREESRLFIDINSKQ 150


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 749,987,506
Number of Sequences: 1657284
Number of extensions: 13563513
Number of successful extensions: 30858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30844
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)