Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f08
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces...    27   3.4  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   4.5  

>SPCC970.12 |mis18||kinetochore protein Mis18|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 155

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 566 KRGERNICIYLKRTCLDVTNVTGRVKNS 483
           KR +  +C+Y + +C     V G+V NS
Sbjct: 65  KRSDDGLCVYSELSCTRCNEVIGKVYNS 92


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 630  SYPNFSVARQRYEIRRKFVSVKARRTEHMYLPKTHLFRCYEC 505
            SYPNF+  +Q+YE +R   S  +     +++   ++F C  C
Sbjct: 977  SYPNFANDKQQYE-KRFRQSQLSYNLGRLHIAGDYIFSCVGC 1017


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,745
Number of Sequences: 5004
Number of extensions: 62446
Number of successful extensions: 137
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)