Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f08
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602...    29   4.8  

>02_05_0435 - 28958422-28958665,28959328-28959462,28960056-28960211,
            28960287-28961092,28961177-28961254,28961809-28961883,
            28962127-28962215,28962735-28962843,28963007-28963086,
            28963739-28963794,28963876-28963958,28964049-28964118,
            28964200-28964309,28964395-28964548,28965183-28965382,
            28966175-28966348,28969080-28969277,28970564-28970791
          Length = 1014

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = -3

Query: 675  TTPTESNLKSHHVFYS-YPNFSVARQRYEIRRKFVSVKARRTEHMYLPKTHLFRCYECNW 499
            +T TES+  + HV Y  Y N + ++  ++ R      + +     Y  +T +F C +  W
Sbjct: 897  STLTESSASTGHVTYDGYHNANYSQLNFQSRHGQPFQRRKAWSLFYSRRTAVFLCRKGFW 956

Query: 498  ESEELW*CYLECHESKLLFVCVDCDS 421
            +   +W  +    +   L VC+ C+S
Sbjct: 957  KDFLVW-IWRNAIQLVALVVCI-CNS 980


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,411,726
Number of Sequences: 37544
Number of extensions: 350006
Number of successful extensions: 705
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)