Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17f06
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 2.0
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 2.7
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 25 3.6
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 25 4.7
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 4.7
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 4.7
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 25 4.7
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 25 6.2
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 6.2
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 24 8.2
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 2.0
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 408 IRKIELTTTVTPLSIFKRKSSSLKTVCEVNEWVVTDMGPRTQCLTTPSLLSKVS 247
IRKI + P I +S+ L V ++W+V G TQ T +L+K++
Sbjct: 484 IRKIAIEMRNVPNKIHGIQSNKLMYVRYADDWIVAVNGSYTQ---TKEILAKIT 534
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.8 bits (54), Expect = 2.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 17 LPRARDHAHXSPPSHKFIQSHC 82
L +++ +A + SHK++Q HC
Sbjct: 689 LDKSKSYACCTSESHKYVQGHC 710
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 3.6
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +2
Query: 194 WIFKSFNS*GLFKLIQLWDTFDSKLGVVRHCVRGP 298
W S GL++++ +DT +++ G +GP
Sbjct: 85 WFLNSVGPDGLYRMVSAFDTKEAQAGCTFGYTKGP 119
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 259 VKGIPQLDELEKALAVKGLKDPWIRNEAWRYHP 161
+KGI LDEL+KA+ +K + + +R P
Sbjct: 243 IKGILTLDELQKAIKLKQTELDKLERRLYRPSP 275
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.0 bits (52), Expect = 4.7
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 2 NKVNALP-RARDHAHXSPPSHKFIQSHCDYCESQSNGESSKEEFSGSLPASAKS 160
N ++ LP R+ H H +PP K I S + + S + S P S S
Sbjct: 421 NGLDLLPERSHKHRHSAPPRSKLISSKSEAGRALPGNTSGASISNTSSPHSEAS 474
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 104 NGESSKEEFSGSLPASAKSRVISPSLISD 190
NGE ++EE AK +I+PS I+D
Sbjct: 535 NGEKTEEELISIWLGDAKVELITPSEITD 563
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 4.7
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 243 NWMSLKRP*LLK-DLKIHGSEMRLGDITLDLALAGREPENSSLEDSPLDW 97
NWM ++ K + ++H +L D L+ L R +S+ ++ +DW
Sbjct: 63 NWMEKRKARFKKKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIVDW 112
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 24.6 bits (51), Expect = 6.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 171 LQASFLIHGSLSPLTAKA 224
++ASF+ HG +SPL +A
Sbjct: 18 IEASFVPHGKISPLIKRA 35
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 24.6 bits (51), Expect = 6.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 176 SLISDPWIFKSFNS*GLFKLIQLWDTFDSKL 268
+ I DP++ +SF+ L KLI +T D L
Sbjct: 540 AFIRDPYLIESFDEEPLTKLISSLETDDPSL 570
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 35 HAHX-SPPSHKFIQSHCDYCESQSNGESSKEEFSGSLP 145
+AH S PS K + +HC+ C S ++ E+ +P
Sbjct: 1224 NAHEFSSPSEKTLVNHCNSCNSTTSNTRICEKCYSLVP 1261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,535
Number of Sequences: 5004
Number of extensions: 37099
Number of successful extensions: 97
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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