Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f06
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0144 + 1131781-1131993,1132501-1132599,1133164-1133349           28   2.6  
06_03_1164 + 28104181-28104272,28104359-28104989                       28   3.5  
02_05_0031 - 25215587-25216145,25218108-25218133,25218262-252184...    28   3.5  
01_05_0490 + 22672241-22674679                                         27   4.6  
06_03_0416 + 20568087-20568702,20568767-20570313                       27   6.0  
02_05_0691 - 30949234-30949243,30949613-30950001,30950425-309504...    27   8.0  

>08_01_0144 + 1131781-1131993,1132501-1132599,1133164-1133349
          Length = 165

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -3

Query: 381 VTPL--SIFKRKSSSLKTVCEVNEWVVTDMGPRTQCLTTPSLLSKVSHNW 238
           +TPL  +  K+KS+SL+   + ++W+V D+   T    T  L+S++ + W
Sbjct: 111 ITPLVYATTKKKSASLQQASQSDQWLV-DLNLLTSSGWTTELISQLVNVW 159


>06_03_1164 + 28104181-28104272,28104359-28104989
          Length = 240

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 317 NGWSRTWAPVHSASLLPVYCQR 252
           NGW R WA   S +++ V C R
Sbjct: 146 NGWRRVWAEGDSKAVVDVVCDR 167


>02_05_0031 -
           25215587-25216145,25218108-25218133,25218262-25218486,
           25219809-25220111
          Length = 370

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 317 NGWSRTWAPVHSASLLPVYCQR 252
           NGW R WA   S +++ V C R
Sbjct: 276 NGWRRVWAEGDSKTVVDVVCDR 297


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 295 PPYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPG 158
           PP   P     +V+ +P+ +ELE  + V+ +K P   +    + PG
Sbjct: 466 PPPARPRRRSRSVESLPRTEELEAEIVVEEIKYPLPSSSPAMFPPG 511


>06_03_0416 + 20568087-20568702,20568767-20570313
          Length = 720

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 135 PENS-SLEDSPLDWDSQ*SQWLWIN 64
           PENS  LE + LDWD     + WIN
Sbjct: 234 PENSFGLEFARLDWDGHMRLYQWIN 258


>02_05_0691 -
           30949234-30949243,30949613-30950001,30950425-30950449,
           30950594-30950688,30950842-30951359,30951652-30951736,
           30951842-30952633
          Length = 637

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 207 DLKIHGSEMRLGDITLDLALAGREPENS 124
           + ++HG EM L +I+ DLA +     NS
Sbjct: 519 ETRVHGLEMALDEISRDLAASSGRTSNS 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,893,044
Number of Sequences: 37544
Number of extensions: 259428
Number of successful extensions: 764
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)