Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f06
         (416 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    24   1.9  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    24   1.9  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    23   5.9  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    23   5.9  
AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless male-spe...    23   5.9  
AY146728-1|AAO12088.1|  131|Anopheles gambiae odorant-binding pr...    22   7.8  

>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -3

Query: 225 RP*LLKDLKIHGSEMRLGDITLDLALAGREPENSSLEDSPLDW 97
           +P  ++DL+   S   +GD+T  +A + +   +SS  +S L +
Sbjct: 132 QPTAVQDLRKWTSTEAIGDVTTGIACSAKIASHSSTNNSVLPY 174


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -3

Query: 225 RP*LLKDLKIHGSEMRLGDITLDLALAGREPENSSLEDSPLDW 97
           +P  ++DL+   S   +GD+T  +A + +   +SS  +S L +
Sbjct: 133 QPTAVQDLRKWTSTEAIGDVTTGIACSAKIASHSSTNNSVLPY 175


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 284 SASLLPVYCQRYPT 243
           S+  LP+Y  RYPT
Sbjct: 3   SSPALPLYASRYPT 16


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 284 SASLLPVYCQRYPT 243
           S+  LP+Y  RYPT
Sbjct: 3   SSPALPLYASRYPT 16


>AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless
           male-specific zinc-fingerC isoform protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 284 SASLLPVYCQRYPT 243
           S+  LP+Y  RYPT
Sbjct: 3   SSPALPLYASRYPT 16


>AY146728-1|AAO12088.1|  131|Anopheles gambiae odorant-binding
           protein AgamOBP21 protein.
          Length = 131

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = -3

Query: 189 SEMRLGDITLD 157
           ++MRLGD+TLD
Sbjct: 45  TKMRLGDLTLD 55


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,720
Number of Sequences: 2352
Number of extensions: 8752
Number of successful extensions: 60
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 34205040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)