Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17f06
(416 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456924-1|CAG33205.1| 98|Homo sapiens NDUFB3 protein. 69 8e-12
BC018183-1|AAH18183.1| 98|Homo sapiens NADH dehydrogenase (ubi... 69 8e-12
AF047183-1|AAC04268.1| 98|Homo sapiens NADH-ubiquinone oxidore... 69 8e-12
AF035839-1|AAC15590.1| 98|Homo sapiens NADH:ubiquinone oxidore... 69 8e-12
AC007272-1|AAX88972.1| 98|Homo sapiens unknown protein. 69 8e-12
AL079314-1|CAB45280.1| 232|Homo sapiens hypothetical protein, s... 32 0.88
BC064903-1|AAH64903.1| 304|Homo sapiens zinc finger protein 364... 31 1.5
BC054049-1|AAH54049.1| 304|Homo sapiens zinc finger protein 364... 31 1.5
AL390725-6|CAI13717.1| 304|Homo sapiens zinc finger protein 364... 31 1.5
AF542552-1|AAQ09535.1| 304|Homo sapiens zinc finger protein 364... 31 1.5
AF419857-1|AAP97292.1| 304|Homo sapiens hypothetical protein pr... 31 1.5
Z97632-4|CAB10730.1| 755|Homo sapiens HIV-1 Tat specific factor... 29 6.2
U76992-1|AAB18823.1| 754|Homo sapiens Tat-SF1 protein. 29 6.2
BT006886-1|AAP35532.1| 755|Homo sapiens HIV TAT specific factor... 29 6.2
BC009896-1|AAH09896.1| 755|Homo sapiens HIV-1 Tat specific fact... 29 6.2
AB209303-1|BAD92540.1| 758|Homo sapiens HIV TAT specific factor... 29 8.2
>CR456924-1|CAG33205.1| 98|Homo sapiens NDUFB3 protein.
Length = 98
Score = 68.5 bits (160), Expect = 8e-12
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = -2
Query: 310 GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRA 134
GH HG +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF +
Sbjct: 6 GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSF 63
Query: 133 RKFFFRGFPIGLGLTVITVALDKF 62
FF+GF G V+ V + +
Sbjct: 64 SDVFFKGFKWGFAAFVVAVGAEYY 87
>BC018183-1|AAH18183.1| 98|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 3, 12kDa protein.
Length = 98
Score = 68.5 bits (160), Expect = 8e-12
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = -2
Query: 310 GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRA 134
GH HG +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF +
Sbjct: 6 GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSF 63
Query: 133 RKFFFRGFPIGLGLTVITVALDKF 62
FF+GF G V+ V + +
Sbjct: 64 SDVFFKGFKWGFAAFVVAVGAEYY 87
>AF047183-1|AAC04268.1| 98|Homo sapiens NADH-ubiquinone
oxidoreductase subunit CI-B12 protein.
Length = 98
Score = 68.5 bits (160), Expect = 8e-12
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = -2
Query: 310 GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRA 134
GH HG +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF +
Sbjct: 6 GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSF 63
Query: 133 RKFFFRGFPIGLGLTVITVALDKF 62
FF+GF G V+ V + +
Sbjct: 64 SDVFFKGFKWGFAAFVVAVGAEYY 87
>AF035839-1|AAC15590.1| 98|Homo sapiens NADH:ubiquinone
oxidoreductase B12 subunit protein.
Length = 98
Score = 68.5 bits (160), Expect = 8e-12
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = -2
Query: 310 GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRA 134
GH HG +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF +
Sbjct: 6 GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSF 63
Query: 133 RKFFFRGFPIGLGLTVITVALDKF 62
FF+GF G V+ V + +
Sbjct: 64 SDVFFKGFKWGFAAFVVAVGAEYY 87
>AC007272-1|AAX88972.1| 98|Homo sapiens unknown protein.
Length = 98
Score = 68.5 bits (160), Expect = 8e-12
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = -2
Query: 310 GHGHGP-PYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRA 134
GH HG +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF +
Sbjct: 6 GHEHGHHKMELPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSF 63
Query: 133 RKFFFRGFPIGLGLTVITVALDKF 62
FF+GF G V+ V + +
Sbjct: 64 SDVFFKGFKWGFAAFVVAVGAEYY 87
>AL079314-1|CAB45280.1| 232|Homo sapiens hypothetical protein,
similar to (U06944) PRAJA1 [Mus musculus] protein.
Length = 232
Score = 31.9 bits (69), Expect = 0.88
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 80 CDYCESQSNGESSKEEFSGSLPASAKSRVISPSLISDPWIF 202
C C NGE S + S S ASA +R + S ++D W F
Sbjct: 193 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLNDRWTF 232
>BC064903-1|AAH64903.1| 304|Homo sapiens zinc finger protein 364
protein.
Length = 304
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 80 CDYCESQSNGESSKEEFSGSLPASAKSRVISPSLISDPWIF 202
C C NGE S + S S ASA +R + S + D W F
Sbjct: 265 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLHDRWTF 304
>BC054049-1|AAH54049.1| 304|Homo sapiens zinc finger protein 364
protein.
Length = 304
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 80 CDYCESQSNGESSKEEFSGSLPASAKSRVISPSLISDPWIF 202
C C NGE S + S S ASA +R + S + D W F
Sbjct: 265 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLHDRWTF 304
>AL390725-6|CAI13717.1| 304|Homo sapiens zinc finger protein 364
protein.
Length = 304
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 80 CDYCESQSNGESSKEEFSGSLPASAKSRVISPSLISDPWIF 202
C C NGE S + S S ASA +R + S + D W F
Sbjct: 265 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLHDRWTF 304
>AF542552-1|AAQ09535.1| 304|Homo sapiens zinc finger protein 364
protein.
Length = 304
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 80 CDYCESQSNGESSKEEFSGSLPASAKSRVISPSLISDPWIF 202
C C NGE S + S S ASA +R + S + D W F
Sbjct: 265 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLHDRWTF 304
>AF419857-1|AAP97292.1| 304|Homo sapiens hypothetical protein
protein.
Length = 304
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 80 CDYCESQSNGESSKEEFSGSLPASAKSRVISPSLISDPWIF 202
C C NGE S + S S ASA +R + S + D W F
Sbjct: 265 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLHDRWTF 304
>Z97632-4|CAB10730.1| 755|Homo sapiens HIV-1 Tat specific factor 1
protein.
Length = 755
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 216 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 112
L KDL GSE L + LD L + ENS ED
Sbjct: 570 LEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
>U76992-1|AAB18823.1| 754|Homo sapiens Tat-SF1 protein.
Length = 754
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 216 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 112
L KDL GSE L + LD L + ENS ED
Sbjct: 569 LEKDLDEEGSEKELHENVLDKELEENDSENSEFED 603
>BT006886-1|AAP35532.1| 755|Homo sapiens HIV TAT specific factor 1
protein.
Length = 755
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 216 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 112
L KDL GSE L + LD L + ENS ED
Sbjct: 570 LEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
>BC009896-1|AAH09896.1| 755|Homo sapiens HIV-1 Tat specific factor
1 protein.
Length = 755
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 216 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 112
L KDL GSE L + LD L + ENS ED
Sbjct: 570 LEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
>AB209303-1|BAD92540.1| 758|Homo sapiens HIV TAT specific factor 1
variant protein.
Length = 758
Score = 28.7 bits (61), Expect = 8.2
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 216 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 112
L KDL GSE L + LD L + ENS ED
Sbjct: 573 LEKDLDEEGSEKELHENILDKELEENDSENSEFED 607
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,048,978
Number of Sequences: 237096
Number of extensions: 1525180
Number of successful extensions: 2904
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2904
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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