Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17f06
(416 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-3244|AAF46744.1| 110|Drosophila melanogaster CG10320-P... 99 2e-21
AF220096-1|AAF26436.1| 380|Drosophila melanogaster homeobox pro... 30 1.4
AY118312-1|AAM48341.1| 836|Drosophila melanogaster GH26429p pro... 29 1.9
AE014297-2501|AAN13770.3| 836|Drosophila melanogaster CG7125-PD... 29 1.9
AE014297-2500|AAF55537.4| 836|Drosophila melanogaster CG7125-PC... 29 1.9
AE014297-2499|AAN13769.3| 836|Drosophila melanogaster CG7125-PB... 29 1.9
AE014297-2498|AAF55536.4| 836|Drosophila melanogaster CG7125-PA... 29 1.9
AE013599-260|AAS64790.2| 1998|Drosophila melanogaster CG33558-PA... 29 1.9
X60218-1|CAA42779.1| 363|Drosophila melanogaster Sd protein pro... 29 3.3
L14644-1|AAB88625.1| 2895|Drosophila melanogaster hyperplastic d... 29 3.3
AE014297-1012|AAF54431.2| 2885|Drosophila melanogaster CG9484-PA... 29 3.3
U02491-1|AAA20216.1| 623|Drosophila melanogaster dsh protein. 28 4.3
L26974-1|AAA16535.1| 623|Drosophila melanogaster dsh protein. 28 4.3
BT023781-1|AAZ41790.1| 623|Drosophila melanogaster LD20984p pro... 28 4.3
AY060673-1|AAL28221.3| 446|Drosophila melanogaster GH10523p pro... 28 4.3
AE014298-1598|AAN09293.1| 601|Drosophila melanogaster CG18361-P... 28 4.3
AE014298-1597|AAF48033.1| 623|Drosophila melanogaster CG18361-P... 28 4.3
AE014297-1276|AAF54621.2| 446|Drosophila melanogaster CG31388-P... 28 4.3
BT023211-1|AAY55627.1| 425|Drosophila melanogaster IP10727p pro... 27 7.6
AY122253-1|AAM52765.1| 1776|Drosophila melanogaster SD06366p pro... 27 7.6
AY089220-1|AAL89958.1| 944|Drosophila melanogaster AT01839p pro... 27 7.6
AF312693-1|AAK28060.1| 1776|Drosophila melanogaster SPRINT-b pro... 27 7.6
AF312692-1|AAK28059.1| 1790|Drosophila melanogaster SPRINT-a pro... 27 7.6
AE014298-1467|AAO41647.1| 944|Drosophila melanogaster CG33175-P... 27 7.6
AE014298-1465|AAF46599.2| 1776|Drosophila melanogaster CG33175-P... 27 7.6
AE014298-1464|AAS65425.1| 1789|Drosophila melanogaster CG33175-P... 27 7.6
AE013599-2989|AAF57488.2| 425|Drosophila melanogaster CG11788-P... 27 7.6
>AE013599-3244|AAF46744.1| 110|Drosophila melanogaster CG10320-PA
protein.
Length = 110
Score = 99.1 bits (236), Expect = 2e-21
Identities = 45/84 (53%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = -2
Query: 316 MGGHGHGPPYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHP-GFGTRWQ 140
MGGH HG PYTVPH S + V+ +PQL E+++AL +GLKDPW+RNE WRY P FGT
Sbjct: 1 MGGH-HGEPYTVPHASTYKVESVPQLVEVKEALGRQGLKDPWLRNEVWRYEPKAFGTHRS 59
Query: 139 RARKFFFRGFPIGLGLTVITVALD 68
R F FRG +G + TVA++
Sbjct: 60 RLNTFLFRGLGVGFCAFLATVAVE 83
>AF220096-1|AAF26436.1| 380|Drosophila melanogaster homeobox
protein Scarecrow protein.
Length = 380
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 41 HXSPPSHK-FIQSHCDYCESQSNGESSKEEFSGSLPASAKSRVISPSLISD 190
H +P K + Q+H C+ Q+ ++ E+ + PAS+ RV P L+ D
Sbjct: 203 HLTPTQVKIWFQNHRYKCKRQAKRKAMAEQNQHNQPASSPRRVAVPVLVKD 253
>AY118312-1|AAM48341.1| 836|Drosophila melanogaster GH26429p
protein.
Length = 836
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 PRARDHAHXSPPSHKFIQSHCDYCESQSNGESSKEEFSGSLPASAKSRVISPS 178
P+A +AH SPP + + S S GE+SK G S S SPS
Sbjct: 331 PKALTNAHNSPP--ELVNGGLVDDSSVSGGETSKSSSDGQSEQSQSSTSSSPS 381
>AE014297-2501|AAN13770.3| 836|Drosophila melanogaster CG7125-PD,
isoform D protein.
Length = 836
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 PRARDHAHXSPPSHKFIQSHCDYCESQSNGESSKEEFSGSLPASAKSRVISPS 178
P+A +AH SPP + + S S GE+SK G S S SPS
Sbjct: 331 PKALTNAHNSPP--ELVNGGLVDDSSVSGGETSKSSSDGQSEQSQSSTSSSPS 381
>AE014297-2500|AAF55537.4| 836|Drosophila melanogaster CG7125-PC,
isoform C protein.
Length = 836
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 PRARDHAHXSPPSHKFIQSHCDYCESQSNGESSKEEFSGSLPASAKSRVISPS 178
P+A +AH SPP + + S S GE+SK G S S SPS
Sbjct: 331 PKALTNAHNSPP--ELVNGGLVDDSSVSGGETSKSSSDGQSEQSQSSTSSSPS 381
>AE014297-2499|AAN13769.3| 836|Drosophila melanogaster CG7125-PB,
isoform B protein.
Length = 836
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 PRARDHAHXSPPSHKFIQSHCDYCESQSNGESSKEEFSGSLPASAKSRVISPS 178
P+A +AH SPP + + S S GE+SK G S S SPS
Sbjct: 331 PKALTNAHNSPP--ELVNGGLVDDSSVSGGETSKSSSDGQSEQSQSSTSSSPS 381
>AE014297-2498|AAF55536.4| 836|Drosophila melanogaster CG7125-PA,
isoform A protein.
Length = 836
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +2
Query: 20 PRARDHAHXSPPSHKFIQSHCDYCESQSNGESSKEEFSGSLPASAKSRVISPS 178
P+A +AH SPP + + S S GE+SK G S S SPS
Sbjct: 331 PKALTNAHNSPP--ELVNGGLVDDSSVSGGETSKSSSDGQSEQSQSSTSSSPS 381
>AE013599-260|AAS64790.2| 1998|Drosophila melanogaster CG33558-PA
protein.
Length = 1998
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 35 HAHXSPPSHKFIQSHCDYCESQSNGESSKEEFSGSLPASAKSRVISPSLIS 187
H++ S SH+ +Q + +SQ N S+ S S+ ++A S PS+ S
Sbjct: 510 HSNDSTGSHQLLQQQQQHHQSQQNHHSATATRSHSISSTASSLHSHPSIDS 560
>X60218-1|CAA42779.1| 363|Drosophila melanogaster Sd protein
protein.
Length = 363
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 372 LSIFKR-KSSSLKTVCEVNEWVVTDMGPRTQCLTTPS 265
L+ FKR KS KT+C ++ W + R+ C T S
Sbjct: 300 LNPFKRQKSGKWKTICTISRWPNSSSTRRSSCSRTTS 336
>L14644-1|AAB88625.1| 2895|Drosophila melanogaster hyperplastic discs
protein protein.
Length = 2895
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +2
Query: 32 DHAHXSPPSHKFIQSHCDYCESQSNGESSKEEFSGSLPASAKSRVISPSLISDP 193
DHA+ P+ S+ SQ+ +S +++ S +P+S++S ++S + P
Sbjct: 1059 DHAYIPWPAETPAASNLSASSSQNVSDSIEDDISKIIPSSSQSSMLSNIKLGSP 1112
>AE014297-1012|AAF54431.2| 2885|Drosophila melanogaster CG9484-PA
protein.
Length = 2885
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +2
Query: 32 DHAHXSPPSHKFIQSHCDYCESQSNGESSKEEFSGSLPASAKSRVISPSLISDP 193
DHA+ P+ S+ SQ+ +S +++ S +P+S++S ++S + P
Sbjct: 1066 DHAYIPWPAETPAASNLSASSSQNVSDSIEDDISKIIPSSSQSSMLSNIKLGSP 1119
>U02491-1|AAA20216.1| 623|Drosophila melanogaster dsh protein.
Length = 623
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 397 RTNYYCHTV--VNF*KKILFAKNCMRSK*MGGHGHGPPYTVPH 275
R+NY HTV + F ++ + N R+ + G GH P+ +PH
Sbjct: 455 RSNYIKHTVNKLTFSEQCYYVVNEERNPNLLGRGHLHPHQLPH 497
>L26974-1|AAA16535.1| 623|Drosophila melanogaster dsh protein.
Length = 623
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 397 RTNYYCHTV--VNF*KKILFAKNCMRSK*MGGHGHGPPYTVPH 275
R+NY HTV + F ++ + N R+ + G GH P+ +PH
Sbjct: 455 RSNYIKHTVNKLTFSEQCYYVVNEERNPNLLGRGHLHPHQLPH 497
>BT023781-1|AAZ41790.1| 623|Drosophila melanogaster LD20984p
protein.
Length = 623
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 397 RTNYYCHTV--VNF*KKILFAKNCMRSK*MGGHGHGPPYTVPH 275
R+NY HTV + F ++ + N R+ + G GH P+ +PH
Sbjct: 455 RSNYIKHTVNKLTFSEQCYYVVNEERNPNLLGRGHLHPHQLPH 497
>AY060673-1|AAL28221.3| 446|Drosophila melanogaster GH10523p
protein.
Length = 446
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 8 VNALPRARDHAHXSPPSHKFIQSHCD 85
V+ L + H H PP KF+ HCD
Sbjct: 207 VDELKLHKYHLHDIPPDTKFVCDHCD 232
>AE014298-1598|AAN09293.1| 601|Drosophila melanogaster CG18361-PB,
isoform B protein.
Length = 601
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 397 RTNYYCHTV--VNF*KKILFAKNCMRSK*MGGHGHGPPYTVPH 275
R+NY HTV + F ++ + N R+ + G GH P+ +PH
Sbjct: 433 RSNYIKHTVNKLTFSEQCYYVVNEERNPNLLGRGHLHPHQLPH 475
>AE014298-1597|AAF48033.1| 623|Drosophila melanogaster CG18361-PA,
isoform A protein.
Length = 623
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 397 RTNYYCHTV--VNF*KKILFAKNCMRSK*MGGHGHGPPYTVPH 275
R+NY HTV + F ++ + N R+ + G GH P+ +PH
Sbjct: 455 RSNYIKHTVNKLTFSEQCYYVVNEERNPNLLGRGHLHPHQLPH 497
>AE014297-1276|AAF54621.2| 446|Drosophila melanogaster CG31388-PA
protein.
Length = 446
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 8 VNALPRARDHAHXSPPSHKFIQSHCD 85
V+ L + H H PP KF+ HCD
Sbjct: 207 VDELKLHKYHLHDIPPDTKFVCDHCD 232
>BT023211-1|AAY55627.1| 425|Drosophila melanogaster IP10727p
protein.
Length = 425
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 393 LTTTVTPLSIFKRKSSSLKTVCEVNEWVVTDMGPRTQCLTTPSL 262
L + P +I R + KT W + +M P +C TTP+L
Sbjct: 360 LAEELLPTNISDRMRALFKTK---KRWTMEEMEPYIECFTTPNL 400
>AY122253-1|AAM52765.1| 1776|Drosophila melanogaster SD06366p protein.
Length = 1776
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +2
Query: 71 QSHCDYCESQSNG---ESSKE---EFSGSLPASAKSRVISPSL 181
QSH CE ++ ESS + +FSG +PA +++ ++ P+L
Sbjct: 970 QSHLTPCEEETTATPNESSSQSLLQFSGDVPARSRAGLLLPNL 1012
>AY089220-1|AAL89958.1| 944|Drosophila melanogaster AT01839p
protein.
Length = 944
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +2
Query: 71 QSHCDYCESQSNG---ESSKE---EFSGSLPASAKSRVISPSL 181
QSH CE ++ ESS + +FSG +PA +++ ++ P+L
Sbjct: 521 QSHLTPCEEETTATPNESSSQSLLQFSGDVPARSRAGLLLPNL 563
>AF312693-1|AAK28060.1| 1776|Drosophila melanogaster SPRINT-b protein.
Length = 1776
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +2
Query: 71 QSHCDYCESQSNG---ESSKE---EFSGSLPASAKSRVISPSL 181
QSH CE ++ ESS + +FSG +PA +++ ++ P+L
Sbjct: 970 QSHLTPCEEETTATPNESSSQSLLQFSGDVPARSRAGLLLPNL 1012
>AF312692-1|AAK28059.1| 1790|Drosophila melanogaster SPRINT-a protein.
Length = 1790
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +2
Query: 71 QSHCDYCESQSNG---ESSKE---EFSGSLPASAKSRVISPSL 181
QSH CE ++ ESS + +FSG +PA +++ ++ P+L
Sbjct: 984 QSHLTPCEEETTATPNESSSQSLLQFSGDVPARSRAGLLLPNL 1026
>AE014298-1467|AAO41647.1| 944|Drosophila melanogaster CG33175-PH,
isoform H protein.
Length = 944
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +2
Query: 71 QSHCDYCESQSNG---ESSKE---EFSGSLPASAKSRVISPSL 181
QSH CE ++ ESS + +FSG +PA +++ ++ P+L
Sbjct: 521 QSHLTPCEEETTATPNESSSQSLLQFSGDVPARSRAGLLLPNL 563
>AE014298-1465|AAF46599.2| 1776|Drosophila melanogaster CG33175-PG,
isoform G protein.
Length = 1776
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +2
Query: 71 QSHCDYCESQSNG---ESSKE---EFSGSLPASAKSRVISPSL 181
QSH CE ++ ESS + +FSG +PA +++ ++ P+L
Sbjct: 970 QSHLTPCEEETTATPNESSSQSLLQFSGDVPARSRAGLLLPNL 1012
>AE014298-1464|AAS65425.1| 1789|Drosophila melanogaster CG33175-PA,
isoform A protein.
Length = 1789
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +2
Query: 71 QSHCDYCESQSNG---ESSKE---EFSGSLPASAKSRVISPSL 181
QSH CE ++ ESS + +FSG +PA +++ ++ P+L
Sbjct: 983 QSHLTPCEEETTATPNESSSQSLLQFSGDVPARSRAGLLLPNL 1025
>AE013599-2989|AAF57488.2| 425|Drosophila melanogaster CG11788-PA
protein.
Length = 425
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 393 LTTTVTPLSIFKRKSSSLKTVCEVNEWVVTDMGPRTQCLTTPSL 262
L + P +I R + KT W + +M P +C TTP+L
Sbjct: 360 LAEELLPTNISDRMRALFKTK---KRWTMEEMEPYIECFTTPNL 400
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,245,517
Number of Sequences: 53049
Number of extensions: 415608
Number of successful extensions: 1429
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1251032760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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