Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f06
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70034-4|CAA93855.1|  103|Caenorhabditis elegans Hypothetical pr...    61   3e-10
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    31   0.34 
U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical pr...    30   0.59 
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF024493-1|AAB70327.3|  198|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z83110-2|CAB05524.1|  299|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U97005-4|AAB52283.1|  314|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U50309-4|AAG24133.1|  267|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z70034-4|CAA93855.1|  103|Caenorhabditis elegans Hypothetical
           protein C18E9.4 protein.
          Length = 103

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
 Frame = -2

Query: 316 MGGHGHGPPYTVPHYSQFT-VKGIPQLDELEKALAVKGLKDPWIRNEAWRY---HPGFGT 149
           MGG GH  P+ +P+YS ++  +  PQL + EK LA  GLKDPWIRN  + Y   +P    
Sbjct: 1   MGG-GHHEPFKIPNYSIYSNFRDFPQLAQHEKRLAQIGLKDPWIRNYVYLYDRKYPHVVG 59

Query: 148 RWQRARKFFFRGFPIGLGLTVITVALDK 65
           +W   +K    G+  G+  T   + +++
Sbjct: 60  QWAHFKKLILPGWKAGVAFTAALIFVEE 87


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 35  HAHXSPPSHKFIQSHCDYCESQSNGESSKEEFSGSLPASAKSRVISPS 178
           HAH + P H  +  H  + ++Q +  SS    S S  +S+ S   S S
Sbjct: 84  HAHGAHPGHHEVHHHHHHVKAQDSSSSSSSSSSSSSSSSSSSSSSSSS 131


>U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical
           protein C46H3.2a protein.
          Length = 713

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 390 TTTVTPLSIFKRKSSSLKTVCEVNEWVVTDMGPRTQCLTTPSLLSKVSHNWMS 232
           TT V    +F RK +S     + N  V+ D G     LTTP + ++ +HN MS
Sbjct: 88  TTQVWKGIVFGRKGNSRSGFFQSN--VIEDAGASDGILTTPKIETRKNHNKMS 138


>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical protein
            M18.5 protein.
          Length = 1134

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 207  DLKIHGSEMRLGDITLDLALAGREPENSSLEDSPLDWDSQ 88
            DLK+   E+ + D+   ++L        + E+   DW+SQ
Sbjct: 908  DLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQ 947


>AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical
           protein C16A11.5 protein.
          Length = 643

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +2

Query: 11  NALPRARDHAHXSPPSHKFIQSHCDYCESQSNGESSKEE 127
           N  P  +   H     H+ +  HCD C  +   +S  +E
Sbjct: 383 NRSPFLKQFLHNQKACHRLVGLHCDLCIKEKVEKSENQE 421


>AF024493-1|AAB70327.3|  198|Caenorhabditis elegans Hypothetical
           protein F23F1.4 protein.
          Length = 198

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 80  CDYCESQSNGESSKEEFSGSL 142
           CD CES +N E ++E+ S SL
Sbjct: 158 CDVCESLTNLEQNEEDQSNSL 178


>Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical
           protein C29F7.2 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 238 DELEKALAVKGLKDPWIRNE 179
           D+L   L  KG+K PW R E
Sbjct: 314 DKLSSGLEAKGVKMPWTREE 333


>Z83110-2|CAB05524.1|  299|Caenorhabditis elegans Hypothetical
           protein F57C2.2 protein.
          Length = 299

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 271 SQFTVKGIPQLDELEKALAVKGLKD 197
           S+  VK I Q+D +EKA A+K   D
Sbjct: 255 SKLLVKSIRQMDSIEKAKALKSSPD 279


>Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical
           protein F15H10.7 protein.
          Length = 666

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 19/84 (22%), Positives = 38/84 (45%)
 Frame = -3

Query: 327 EVNEWVVTDMGPRTQCLTTPSLLSKVSHNWMSLKRP*LLKDLKIHGSEMRLGDITLDLAL 148
           E  E    D    T+ + TP  +  V  + + L    +LKD+K   + ++   +   + +
Sbjct: 542 EKTEEYEPDSKELTEYMCTPMEIQNVEFSSVRLPMLSVLKDVKSEDTPLQSFSLQYHVVV 601

Query: 147 AGREPENSSLEDSPLDWDSQ*SQW 76
             + P N+ LE S L+ + + + W
Sbjct: 602 RAKAPSNALLE-STLEHNLKTNTW 624


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical protein
            T06E4.1 protein.
          Length = 1295

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 5    KVNALPRARDHAHXSPPSHKFIQSHCDYCESQSNGESSKEEFSGSLPASAKSRVISP 175
            ++   P +R+H+H  PP    ++   +  +     +S +EEFS S  A   S V+ P
Sbjct: 1220 RLGVKPLSREHSHAEPP-EPVVEDKFEDAQ-----DSFQEEFSHSPDAITSSTVLHP 1270


>U97005-4|AAB52283.1|  314|Caenorhabditis elegans Hypothetical
           protein F19F10.5 protein.
          Length = 314

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 95  SQSNGESSKEEFSGSLPASAKSRVISPSLISDPW 196
           S SN  S++   + S P S+   VI+P ++ DP+
Sbjct: 238 SSSNSSSARTMSATSSPTSSLEDVINPPVLIDPF 271


>U50309-4|AAG24133.1|  267|Caenorhabditis elegans Hypothetical
           protein F58G4.4 protein.
          Length = 267

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 149 SAKSRVISPSLISDPWIFKSFNS 217
           S K  V  P L++DPW+ K+ ++
Sbjct: 95  SGKKNVRLPLLVNDPWVHKTISN 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,731,740
Number of Sequences: 27780
Number of extensions: 206924
Number of successful extensions: 586
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)