Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f06
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.45 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   0.79 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   4.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   9.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   9.7  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 0.45
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 299 WAPVHSASLLPVYCQ 255
           WAP H+  LL VY Q
Sbjct: 298 WAPFHAQRLLAVYAQ 312


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 299 WAPVHSASLLPVYCQ 255
           WAP H+  LL VY Q
Sbjct: 283 WAPFHTQRLLYVYAQ 297


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 166 HPGFGTRWQRARKFF 122
           HPGF  +  RAR+ F
Sbjct: 199 HPGFADKEYRARRKF 213


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 310 GHGHGPPYTVPHY 272
           GHGH   +  PH+
Sbjct: 420 GHGHSHIHATPHH 432



 Score = 20.6 bits (41), Expect = 7.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 113 SSKEEFSGSLPASAKSRVISPSLISDPWIFKS 208
           S+ E F G+ P +   +     L   P IFKS
Sbjct: 115 SADEGFDGTYPTNVVVKNNGTCLYVPPGIFKS 146


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 280 ALCTGAHVRDHPFIYFAY 333
           ALC    V D+P IY  Y
Sbjct: 220 ALCEKPEVCDYPDIYSGY 237


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 280 ALCTGAHVRDHPFIYFAY 333
           ALC    V D+P IY  Y
Sbjct: 220 ALCEKPEVCDYPDIYSGY 237


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 280 ALCTGAHVRDHPFIYFAY 333
           ALC    V D+P IY  Y
Sbjct: 220 ALCEKPEVCDYPDIYSGY 237


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 299 WAPVHSASLLPVY 261
           WAP H   LL VY
Sbjct: 273 WAPFHVQRLLYVY 285


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 68  IQSHCDYCESQSNGESSKEEFSGSLPASAKSR 163
           + ++ D C++  N   + E F G +    K+R
Sbjct: 461 LYTYFDKCDTLINNAVAVENFKGGMYLRLKAR 492


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 68  IQSHCDYCESQSNGESSKEEFSGSLPASAKSR 163
           + ++ D C++  N   + E F G +    K+R
Sbjct: 461 LYTYFDKCDTLINNAVAVENFKGGMYLRLKAR 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,081
Number of Sequences: 438
Number of extensions: 2504
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)