Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f03
         (286 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803...   120   1e-28
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603...   119   3e-28
07_01_0385 - 2871628-2872131                                           28   1.3  
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912...    27   1.8  
09_06_0303 - 22149214-22149474,22150099-22150236,22150856-221511...    27   1.8  
07_03_1237 + 25073010-25073513                                         27   3.1  
02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776     27   3.1  
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138...    26   4.1  
02_01_0679 - 5048653-5051394                                           26   4.1  
07_03_0039 - 12718972-12720699                                         26   5.4  
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949...    25   7.1  
11_01_0401 - 3020606-3020932,3021480-3021626,3021711-3021878,302...    25   9.4  
06_03_0075 - 16253719-16253841,16255076-16255195,16255752-162558...    25   9.4  
04_04_1651 - 35057525-35057680,35058302-35058311,35058429-350585...    25   9.4  
03_05_0669 + 26589867-26589927,26590674-26590858,26590950-265910...    25   9.4  
01_02_0071 + 10822008-10822011,10822219-10822364,10822452-108225...    25   9.4  
01_01_0586 - 4353919-4353973,4354623-4354940,4355043-4355323           25   9.4  
01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272...    25   9.4  

>05_07_0070 +
           27479654-27479672,27479864-27479922,27480339-27480378,
           27480477-27480565,27481065-27481147,27481219-27481282
          Length = 117

 Score =  120 bits (290), Expect = 1e-28
 Identities = 52/82 (63%), Positives = 63/82 (76%)
 Frame = -3

Query: 248 KMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKR 69
           ++ KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR  VGIW CK 
Sbjct: 25  ELTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKD 84

Query: 68  CKRTVAGGAWVFSTTAASSCRS 3
           C +  AGGA+  +T +A + RS
Sbjct: 85  CGKVKAGGAYTMNTASAVTVRS 106


>01_06_0260 -
           27959188-27959251,27959342-27959424,27960220-27960308,
           27960388-27960427,27960938-27960981,27961240-27961288
          Length = 122

 Score =  119 bits (287), Expect = 3e-28
 Identities = 52/79 (65%), Positives = 61/79 (77%)
 Frame = -3

Query: 239 KRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKR 60
           KRTKK GI GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR  VGIW CK C +
Sbjct: 33  KRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGK 92

Query: 59  TVAGGAWVFSTTAASSCRS 3
             AGGA+  +T +A + RS
Sbjct: 93  VKAGGAYTMNTASAVTVRS 111


>07_01_0385 - 2871628-2872131
          Length = 167

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 137 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 39
           + C FC K   K   +G       K  VAGG+W
Sbjct: 47  FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79


>12_02_0648 +
           21490202-21490296,21490547-21490634,21491216-21491260,
           21491355-21491387,21491480-21491557,21491647-21491690,
           21491765-21491805,21492102-21492184,21492261-21492352,
           21492468-21492537,21492838-21492876,21493670-21493687,
           21494586-21494713,21495235-21495358,21495585-21495716,
           21496092-21496223,21496582-21496665
          Length = 441

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 158 EVTQHAKYTCSFCGKDAM 105
           E+ +H KYTC  C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211


>09_06_0303 -
           22149214-22149474,22150099-22150236,22150856-22151100,
           22151344-22151809
          Length = 369

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
 Frame = -3

Query: 275 STFVSERFTKMAKRTKKVG-ITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKR 99
           S  +  RF       ++V     K G  Y   L K          AKYT    G  A  R
Sbjct: 60  SDMMKSRFEAFKANARQVNEFNKKEGMSYTLGLNKFSDMSYEEFAAKYTGGMPGSIADDR 119

Query: 98  SCVGIWSCKRCKRTV 54
           S  G  SCK  ++ V
Sbjct: 120 SSAGAVSCKLREKNV 134


>07_03_1237 + 25073010-25073513
          Length = 167

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 104 KRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 9
           KR   G+  C  C RT++GG++ +     ++C
Sbjct: 24  KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53


>02_03_0063 + 14600318-14600322,14600936-14601011,14601615-14601776
          Length = 80

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -3

Query: 284 FSLSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAK 138
           + L  ++   +  + K   + G+T +  +RY   LR+ ++K+EV    K
Sbjct: 11  YELEVYMLTIYLLLHKNQVRHGVTARRTSRYYVVLRRELRKLEVVGKVK 59


>11_03_0158 +
           10911997-10912078,10912203-10912288,10913780-10913857,
           10913967-10914098,10914385-10914435,10914529-10914669,
           10914754-10914876,10914989-10915066,10915448-10915541,
           10915633-10915739,10915936-10916019,10916649-10916744,
           10916835-10917023,10917705-10917780,10918507-10918610,
           10918708-10918967,10920000-10920086,10920184-10920411,
           10920752-10920826,10921264-10921346,10921552-10921661
          Length = 787

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 280 LCQLLYRRGLPKWP 239
           +C  LY+R  PKWP
Sbjct: 768 VCMSLYKRAYPKWP 781


>02_01_0679 - 5048653-5051394
          Length = 913

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = -1

Query: 274 QLLYRRGLPKWPNVPKRLELLANMAHVTV-----PLYVKWSK-RWK 155
           ++L    LP    VPK LELLA++  + V      L V+W +  WK
Sbjct: 857 EVLLLLSLPSLREVPKGLELLASLKKLNVTMQHHELKVEWERDNWK 902


>07_03_0039 - 12718972-12720699
          Length = 575

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 31  ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRR 183
           EN  A     +LH  +D +  QERF   L +  +    C + S+F  IL +
Sbjct: 416 ENKIATKIIAVLHSNRDTL--QERFDCLLERGLEYKMLCQIVSVFPKILNQ 464


>02_05_1152 +
           34494423-34494586,34494725-34494781,34494851-34494908,
           34494989-34495088,34495270-34495383,34495588-34495810,
           34496112-34496246,34496575-34496679,34496906-34497001,
           34497387-34497516,34497933-34497983,34498538-34498648,
           34499267-34499376,34499490-34499655,34499740-34499820,
           34499907-34499975,34500099-34500212,34500699-34500760,
           34500894-34500990,34501152-34501271
          Length = 720

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 284 FSLSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMV 168
           FS+    S RF+++  R   + I+G  G    + LRK V
Sbjct: 166 FSIEIAESSRFSELLLRIDTMTISGMVGMTEASDLRKKV 204


>11_01_0401 -
           3020606-3020932,3021480-3021626,3021711-3021878,
           3021960-3022218,3024469-3024522,3025200-3025375
          Length = 376

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 131 CSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 39
           C + G + ++  CV IW+  R       G W
Sbjct: 284 CRYIGPNKLRNFCVDIWNWLRAVPEKLQGKW 314


>06_03_0075 -
           16253719-16253841,16255076-16255195,16255752-16255895,
           16256323-16256529,16256832-16256876,16257262-16257313,
           16259756-16259831,16260785-16260893,16260992-16261183
          Length = 355

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 25/83 (30%), Positives = 34/83 (40%)
 Frame = -3

Query: 281 SLSTFVSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMK 102
           SL   +++RFT  A R  KVG+  K    Y    RK  ++   +       S   K A  
Sbjct: 39  SLIQSLADRFTASAARAGKVGVRSKQ-VWYWFQNRKYSQRSRNSTKMLPAASGDHKSAFA 97

Query: 101 RSCVGIWSCKRCKRTVAGGAWVF 33
           RS V     K  K ++ GG   F
Sbjct: 98  RSSVQ----KSVKNSLEGGQLEF 116


>04_04_1651 -
           35057525-35057680,35058302-35058311,35058429-35058569,
           35058675-35058784,35058907-35059006,35059108-35059308,
           35059674-35059879,35060504-35060716,35060785-35060923,
           35061370-35061606,35061688-35061893,35062664-35062759,
           35062900-35063040
          Length = 651

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 241 PNVPKRLELLANMAHVTVPLYVKWSKRWK*PNTQSILAHFVVRML 107
           P+   R  L   +A + +P Y  + KR+   NTQ  L+  ++R++
Sbjct: 569 PDTELRESLRLAVAEILLPAYRSFLKRFGLSNTQEFLSLELMRLV 613


>03_05_0669 +
           26589867-26589927,26590674-26590858,26590950-26591045,
           26591128-26591223
          Length = 145

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 235 VPKRLELLANMAHVTVPLYVKW 170
           +P   EL+   +++ +P+YV W
Sbjct: 84  LPDASELIVGSSYICIPVYVSW 105


>01_02_0071 +
           10822008-10822011,10822219-10822364,10822452-10822544,
           10822722-10822781,10822855-10823127,10823229-10823303,
           10823419-10823475,10823593-10823733,10823813-10823863,
           10823905-10823955,10823956-10824051,10824159-10824242,
           10824330-10824432,10824518-10824600
          Length = 438

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 191 GASLRKMVKKMEVTQHAKYTCSFCG 117
           GAS+  +VK   V QHAK  C+F G
Sbjct: 415 GASMEFLVKL--VPQHAKKQCAFLG 437


>01_01_0586 - 4353919-4353973,4354623-4354940,4355043-4355323
          Length = 217

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1

Query: 43 LGYSPLLLPHH 11
          LGYSPL+L HH
Sbjct: 44 LGYSPLVLDHH 54


>01_01_0340 +
           2727135-2727205,2727470-2727639,2728418-2728506,
           2729017-2729070,2729310-2729380,2729504-2729585,
           2729678-2729774,2729902-2729972
          Length = 234

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 226 RLELLANMAHVTVPLYVKWSKRWK*PNTQSILAHFVVRML 107
           R  + + +  +T  L++ W   W  P TQS +  FV  +L
Sbjct: 84  RSPVSSTLPQITGRLFITWGILWSFPETQSYI--FVTSLL 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,658,840
Number of Sequences: 37544
Number of extensions: 171072
Number of successful extensions: 429
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)