Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f02
         (642 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6FX47 Cluster: Diguanylate cyclase/phosphodiesterase; ...    34   2.5  
UniRef50_Q55J97 Cluster: Putative uncharacterized protein; n=1; ...    34   2.5  
UniRef50_Q9RH14 Cluster: Putative uncharacterized protein; n=2; ...    33   4.4  

>UniRef50_A6FX47 Cluster: Diguanylate cyclase/phosphodiesterase;
           n=1; Plesiocystis pacifica SIR-1|Rep: Diguanylate
           cyclase/phosphodiesterase - Plesiocystis pacifica SIR-1
          Length = 333

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 381 SIQLPCISDVDDEDGESLSVHCSTPSPVAQNVILSSTRP 265
           ++ +P I  +D E   S++  CSTPSP  ++   SST P
Sbjct: 267 TLTVPLIGTLDGERMRSITERCSTPSPPGRSATWSSTSP 305


>UniRef50_Q55J97 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 333

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -1

Query: 456 SAPAL-CTPGS-PHRVNLSEELCQQXESIQLPCISDVDDEDGESLSVHCSTPSPVAQNVI 283
           S P L  TP S P R   SEEL      +   C+ D+ DEDG+ L     T   +  +  
Sbjct: 128 SRPVLSATPSSGPSREEYSEELESIAAGMLTECLEDIIDEDGDDLGASFETALELMAHKC 187

Query: 282 LSSTRPVCET 253
              +  +C++
Sbjct: 188 KQGSAAICQS 197


>UniRef50_Q9RH14 Cluster: Putative uncharacterized protein; n=2;
           Zymomonas mobilis|Rep: Putative uncharacterized protein
           - Zymomonas mobilis
          Length = 390

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 27  RSFYMK*DHHTERTKERLVKEHIFSLHM 110
           ++F++K  HH  R K  L+KEH+F+ H+
Sbjct: 74  QTFFIKRHHHKIRNKTELLKEHLFARHL 101


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 471,454,065
Number of Sequences: 1657284
Number of extensions: 6930361
Number of successful extensions: 16091
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16086
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)