Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f02
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   4.9  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   6.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 322 HRETLPVLIVDIADARELDGFXLLTKFLREVDS 420
           H+E    L+ +I +A   DG  L    L  V+S
Sbjct: 185 HKEQFTALVREIRNAFRHDGLLLTMSVLPNVNS 217


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 2   LIFYTSDNTXLLHEIRSSYRAD*GTFSQGTHFQSSYEIYN*NLI 133
           LI +   +  +LH +++  +    TFS  T  ++ ++ +N  LI
Sbjct: 377 LITFHIGSQLVLHTVKTVLKTTMSTFSDITFMRTVWKFFNIFLI 420


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 306 SPVAQNVILSSTRPVCET 253
           SP+ +N+   STR V ET
Sbjct: 22  SPLTENIYGGSTRTVQET 39


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 306 SPVAQNVILSSTRPVCET 253
           SP+ +N+   STR V ET
Sbjct: 22  SPLTENIYGGSTRTVQET 39


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 306 SPVAQNVILSSTRPVCET 253
           SP+ +N+   STR V ET
Sbjct: 22  SPLTENIYGGSTRTVQET 39


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 306 SPVAQNVILSSTRPVCET 253
           SP+ +N+   STR V ET
Sbjct: 22  SPLTENIYGGSTRTVQET 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,589
Number of Sequences: 336
Number of extensions: 1698
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)