Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f02
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    28   1.00 
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    27   1.7  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    27   2.3  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    26   4.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   7.0  

>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 363 ISDVDDEDGESLSVHC 316
           ISD++DED E LSV C
Sbjct: 215 ISDINDEDAEPLSVEC 230


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 402 ELCQQXESIQLPCISDVDDEDGESLSVHCSTP 307
           EL  + + ++LP +SDVD+     +  H +TP
Sbjct: 100 ELALKEKRLKLPNVSDVDNRKKAKIDAHDTTP 131


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 402 ELCQQXESIQLPCISDVDDEDGESLSVHCSTPS--PVAQNVILSSTRPVCE 256
           ++C+  E ++LP +S V  +  +  S+  S PS  P +++  L  T P  E
Sbjct: 305 KICKTEELLELPTLSAVTSDSAQPHSLPASMPSSQPQSRSESLPLTHPNSE 355


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 194 TRPVVLSRRLGAALCTRLTSRSNFNCI 114
           TRP    RR     CTR+T R   NC+
Sbjct: 141 TRPATSRRRCCHPTCTRITLRLAGNCL 167


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 265  RACAAQNYILCYGGWCT 315
            +A + +N  LCY GWC+
Sbjct: 2319 QATSIENLCLCYIGWCS 2335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,497
Number of Sequences: 5004
Number of extensions: 27278
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)