Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f02
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0611 - 23644692-23646439,23647011-23647551,23648851-236489...    28   7.2  

>01_05_0611 -
           23644692-23646439,23647011-23647551,23648851-23648952,
           23649244-23649441
          Length = 862

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 573 VPGLRALDAAHDELGAVLRHNSTLXARXTALTHHMQP*HSAPA-LCTPGSPHRVNLS 406
           +P ++A+D + + L   L  N T+    T   HH Q   + PA LC   S   +NLS
Sbjct: 459 LPSMQAMDLSDNYLSGKLPANLTVPNLMTLHLHHNQIGGTIPACLCQLRSLRVINLS 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,225,471
Number of Sequences: 37544
Number of extensions: 207558
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)