Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e24
         (240 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6T3V2 Cluster: Branched chain alpha-ketoacid dehydroge...    33   1.6  
UniRef50_A0DA29 Cluster: Chromosome undetermined scaffold_42, wh...    31   3.7  
UniRef50_UPI00006CC84B Cluster: hypothetical protein TTHERM_0028...    30   8.6  

>UniRef50_Q6T3V2 Cluster: Branched chain alpha-ketoacid
           dehydrogenase kinase; n=1; Ctenopharyngodon idella|Rep:
           Branched chain alpha-ketoacid dehydrogenase kinase -
           Ctenopharyngodon idella (Grass carp)
          Length = 258

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 68  LTAIPMSFQRNNQVHICLLCLSGNDKH 148
           LT + ++   N  VH+C +CL GN KH
Sbjct: 59  LTNLQLTENENRSVHLCSVCLFGNTKH 85


>UniRef50_A0DA29 Cluster: Chromosome undetermined scaffold_42, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_42,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2077

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -2

Query: 182 RFEILVFHNSYDVYRCQTSKANKYELDYFFESSWELPLIV-SLKSEV 45
           +F +L+  +SYD  + +  K N Y ++  + S+W  PL++ + +SE+
Sbjct: 558 KFRLLILMDSYDEMKLENIKKNIYIINKLY-SNWSNPLVIFTTRSEI 603


>UniRef50_UPI00006CC84B Cluster: hypothetical protein
           TTHERM_00285760; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00285760 - Tetrahymena
           thermophila SB210
          Length = 152

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 146 VYRCQTSKANKYELDYFFESSWEL 75
           V++ Q S  NKY  +YFFE + EL
Sbjct: 115 VFKLQNSNQNKYSAEYFFELAQEL 138


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,397,756
Number of Sequences: 1657284
Number of extensions: 3796980
Number of successful extensions: 10407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10407
length of database: 575,637,011
effective HSP length: 58
effective length of database: 479,514,539
effective search space used: 10069805319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)