Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e24
(240 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 0.76
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 0.76
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 1.0
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 1.3
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 25 1.3
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 1.8
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos... 25 1.8
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac... 23 4.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 23 5.4
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 23 5.4
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 23 5.4
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 23 5.4
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 23 5.4
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 23 5.4
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 23 7.1
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 22 9.4
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 22 9.4
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 22 9.4
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 22 9.4
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 22 9.4
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 0.76
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 29 ISKSNRLQT*VTLLTAIPMSFQRNNQVHIC 118
+S S R + L +PM ++R+N V C
Sbjct: 500 VSPSRRSSSNALYLATLPMGYERSNSVSYC 529
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 25.8 bits (54), Expect = 0.76
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 119 NKYELDYFFESSWELPLIVSLKS 51
NK +L YF +SS ELP+ S ++
Sbjct: 516 NKTQLPYFHQSSSELPISASKRA 538
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 1.0
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 26 DISKSNRLQT*VTLLTAIPMSFQRNNQVHICLL-CLSGNDK 145
D+ ++ + +A PM F R NQ+ ICL CL+GN++
Sbjct: 615 DLPHDQKVMIASLIKSAYPM-FSRTNQL-ICLFYCLTGNEE 653
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.0 bits (52), Expect = 1.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 227 LCAENRLWPFCCQNSRFEILVFHNSYDVYRC 135
L + R+W QN R + L SY YRC
Sbjct: 933 LDTQRRVWKKYVQNYRIQKLTEEISYKNYRC 963
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 1.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 96 EIIKFIFVCFACLATINIVTIVKHENF 176
+I++F C C A I +T KH ++
Sbjct: 76 DILRFYIRCTRCAAEITFITDPKHADY 102
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 107 VHICLLCLSGNDKHRNYCETREFQTSNFDNKKAIID 214
+H C+ C S RN+ + F +NFD + I+D
Sbjct: 425 LHWCINCRSIFSGDRNFIVSSIFDNANFD-RNLIVD 459
>SPCC645.11c |mug117||meiotically upregulated gene
Mug117|Schizosaccharomyces pombe|chr 3|||Manual
Length = 186
Score = 24.6 bits (51), Expect = 1.8
Identities = 7/25 (28%), Positives = 12/25 (48%)
Frame = -2
Query: 209 LWPFCCQNSRFEILVFHNSYDVYRC 135
+W FCC + + +F +Y C
Sbjct: 1 MWKFCCVTEKLTLFLFIYGICIYIC 25
>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 208
Score = 23.4 bits (48), Expect = 4.1
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 170 LVFHNSYDVYR-CQT-SKANKYELDYFFESSWELPLIVSLKSEVYLIW 33
+VFH + + R QT + A + + SS L I+ + S +YL+W
Sbjct: 40 VVFHETNTLVRWVQTLAIAEVFHSIFGLVSSSPLTTIIQVASRLYLVW 87
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +2
Query: 62 TLLTAIPMSFQRNNQVHICLLCLSGNDKHRNYCETR 169
TL ++ + ++ N+ +CLL +S ++ +C T+
Sbjct: 2159 TLGSSSQVEVRKTNESDVCLLGMSISESSGKFCLTK 2194
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 90 FKEIIKFIFVCFACLATINIVTIVKHENFKPRILTTKRP*SIFG 221
F ++++ VC+ L T+ I E + P IL +FG
Sbjct: 377 FNACMRWVLVCWPVLVTMIIYQFTLREAYGPVILAALLLALLFG 420
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 122 LCLSGNDKHRNYCET 166
LCL G+D+HR + ++
Sbjct: 579 LCLEGSDQHRGWFQS 593
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 73 GNSHELSKK*SSSYLFALLVW 135
G++H+LSK S + L+W
Sbjct: 579 GSNHDLSKSSFSGLIIVCLIW 599
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 170 LVFHNSYDVYRCQTSKANKYELDYF 96
L+ H YD R T + YE YF
Sbjct: 91 LIKHGKYDFSRHCTDYGHSYEWPYF 115
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 187 IRGLKFSCFTIVTMFIVARQAKQTNMNLIIS 95
+R K C T+V+ F+ ++ Q MN+ IS
Sbjct: 383 MRRPKTICLTVVSRFLRKSRSSQIPMNVDIS 413
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 101 YFFESSWELPLIVSLKSEVYLIWKYQ 24
YF+ SW P +V + + + I K Q
Sbjct: 397 YFWALSWNTPRVVGVPKKGFNIQKVQ 422
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 90 FKEIIKFIFVCFACLATINIVTIVKHEN 173
F+E K + VCF+CL ++ + N
Sbjct: 933 FEEEGKMLAVCFSCLIFNELIMVALQIN 960
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = -2
Query: 212 RLWPFCCQNSRFEILVFHNSYDVYRCQTSKANKYELDYFF 93
R W ++ +L+F + YD Y+ S N + +F
Sbjct: 45 RFWTIWLKSLVIMVLLFTHIYDCYKTNESVWNVLSIITYF 84
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 134 QTSKANKYELDYFFESSW 81
Q + N+ ELD F SSW
Sbjct: 6 QIERLNEQELDKPFSSSW 23
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 22.2 bits (45), Expect = 9.4
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -2
Query: 119 NKYELDYFFESSWELPLIV-----SLKSEVYLIWKYQR 21
N++EL+YF SW L L++ S + E IW+ R
Sbjct: 2209 NEWELNYFGLQSW-LKLVLADPKKSCEKEFSKIWESMR 2245
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 158 CETREFQTSNFDNKKAIIDFRHTKD 232
CETR KK + DF H +D
Sbjct: 10 CETRRPSICESCLKKQLYDFYHKRD 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,077
Number of Sequences: 5004
Number of extensions: 18397
Number of successful extensions: 60
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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