Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e24
(240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0428 + 17628695-17628773,17628789-17629009 27 2.8
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 25 6.5
12_01_0315 + 2406211-2406478,2406911-2406927 25 8.5
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 25 8.5
10_01_0145 - 1708597-1708824,1710225-1710468,1711217-1711263,171... 25 8.5
10_01_0099 - 1202668-1203023,1203097-1206037 25 8.5
04_04_0508 + 25746949-25747117,25748561-25748826,25748934-25749335 25 8.5
04_03_0242 + 13253268-13253317,13254522-13254573,13254654-132547... 25 8.5
03_05_0340 + 23294044-23294166,23294395-23294640,23294907-232949... 25 8.5
>11_04_0428 + 17628695-17628773,17628789-17629009
Length = 99
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 104 DYFFESSWELPLIVSLKSEVYLIWKYQRRITSYY 3
D+F +++ L S+ +LIW +RR T Y
Sbjct: 23 DFFVGGPYKVRLRKGAHSQAHLIWSARRRFTPIY 56
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +2
Query: 80 PMSFQRNNQVHICLLCLSGNDKHRNYCE 163
P RN + C +C GND + CE
Sbjct: 33 PQEPSRNPGIWQCTICEHGNDAKKKSCE 60
>12_01_0315 + 2406211-2406478,2406911-2406927
Length = 94
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 80 PMSFQRNNQVHIC 118
PMS+ RN +VH C
Sbjct: 81 PMSYSRNGEVHTC 93
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 65 LLTAIPMSFQRNNQVHIC--LLCLSGNDKHRNYC 160
L T++ + F +N ++ C C +DKHR++C
Sbjct: 576 LSTSVVVPFSQNLKLAECNDSTCQPSSDKHRDWC 609
>10_01_0145 -
1708597-1708824,1710225-1710468,1711217-1711263,
1711767-1711857,1712982-1713094,1713387-1713462,
1713501-1713560,1713759-1713835,1714105-1714672,
1715332-1715509,1715632-1715774,1717255-1717424,
1717588-1717822,1718565-1718779
Length = 814
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 80 PMSFQRNNQVHICLLCLSGNDKHRNYCETREFQTSNFD 193
P ++ RN + CL L+ + Y + F+ NFD
Sbjct: 96 PRNYARNFLEYCCLRALAHASQVAGYLSDKSFRRLNFD 133
>10_01_0099 - 1202668-1203023,1203097-1206037
Length = 1098
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 90 FKEIIKFIFVC-FACLATINIVTIVKHENFKPRILTTKRP*SIF 218
F+ ++ + V FA LAT+ + T+ H KP+ TT + +F
Sbjct: 745 FRFLLPVVLVLGFAILATVVLGTVFIHNKRKPQESTTAKGRDMF 788
>04_04_0508 + 25746949-25747117,25748561-25748826,25748934-25749335
Length = 278
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -2
Query: 176 EILVFHNSYD-VYRCQTSKANKYELDYFFESSWELPLIVSLKSEVYLIWKYQRR 18
E LV H Y V + S+ E+D WELP + L + + + ++ R
Sbjct: 21 EELVCHYLYKKVSNERASQGTLVEVDLHAREPWELPDVAKLTASEWYFFSFRDR 74
>04_03_0242 +
13253268-13253317,13254522-13254573,13254654-13254730,
13254804-13254937,13255645-13255815,13255894-13256035,
13256257-13256443,13256932-13256998,13257846-13257892,
13258623-13258629,13258716-13258786,13259229-13259339,
13260404-13260466,13261050-13261187,13261721-13261826,
13262101-13262147,13262416-13262460,13262538-13262604,
13262683-13262737,13263008-13263214,13264723-13264810,
13264940-13265021,13265274-13265320,13265782-13265941,
13266058-13266224,13266360-13266659,13267144-13267200
Length = 914
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +2
Query: 59 VTLLTAIP--MSFQRNNQVHICLLCLS 133
V L+ A+P ++F+R + H C L LS
Sbjct: 738 VNLVDAVPCRIAFERGKERHFCFLALS 764
>03_05_0340 +
23294044-23294166,23294395-23294640,23294907-23294945,
23295439-23295805,23295904-23296136,23296496-23296756
Length = 422
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 197 CCQNSRFEILVF 162
C +NSRFE+L+F
Sbjct: 105 CVENSRFEVLIF 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,814,351
Number of Sequences: 37544
Number of extensions: 91847
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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