Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e24
         (240 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   0.64 
AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical prote...    24   0.85 
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   1.5  
EF117201-1|ABL67438.1|  481|Anopheles gambiae serpin 17 protein.       23   2.0  
CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          22   2.6  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            21   4.5  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    21   7.9  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    21   7.9  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 170 LVFHNSYDVYRCQTS 126
           L+F+N++ VYRC  S
Sbjct: 124 LLFNNNFSVYRCDRS 138


>AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical protein
           protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 49  SDLSDTINGNSHELSKK 99
           S L  TINGNS EL K+
Sbjct: 55  SFLGSTINGNSSELLKR 71


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 158 NSYDVYRCQTSKAN 117
           +SY++YRC  S+ N
Sbjct: 56  DSYNIYRCDRSRLN 69


>EF117201-1|ABL67438.1|  481|Anopheles gambiae serpin 17 protein.
          Length = 481

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 170 LVFHNSYDVYRCQTSKANKYELDYFFESSWEL---PLIVSLKSEVYLIWKYQR 21
           L+F +S  +   QT +   Y  D+FF +  E+   P+ V  KS+   I  Y++
Sbjct: 24  LIFASSLCLTTAQTVQQFAYNTDFFFRNPSEIYPQPVYVP-KSQQETIKTYEK 75


>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 95  RNNQVHICLLCLSGNDKHRNYCETREFQTS 184
           R N V  CL  L   +K RN+ E++E +T+
Sbjct: 251 RWNTVLACLDGLFIREKERNWEESKETETN 280


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 41  NRLQT*VTLLTAIPMSFQRNNQVHICLLC 127
           NR +T V L+ A+P  F      H   LC
Sbjct: 716 NRGRTYVPLVEALPNQFLCKYDTHCFALC 744


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +3

Query: 108 FIFVCFACLATINIVTIVKH 167
           F+F  F  +AT+ ++    H
Sbjct: 467 FVFTLFTIIATVTVLLSAPH 486


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +3

Query: 108 FIFVCFACLATINIVTIVKH 167
           F+F  F  +AT+ ++    H
Sbjct: 467 FVFTLFTIIATVTVLLSAPH 486


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,911
Number of Sequences: 2352
Number of extensions: 4539
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 53
effective length of database: 439,323
effective search space used: 11422398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)