Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e24
(240 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC040567-1|AAH40567.1| 830|Homo sapiens WD repeat domain 75 pro... 28 4.6
AL122097-1|CAB59265.1| 705|Homo sapiens hypothetical protein pr... 28 4.6
AK023276-1|BAB14503.1| 551|Homo sapiens protein ( Homo sapiens ... 28 4.6
AK022607-1|BAB14126.1| 773|Homo sapiens protein ( Homo sapiens ... 28 4.6
AK022581-1|BAB14111.1| 782|Homo sapiens protein ( Homo sapiens ... 28 4.6
AC013439-1|AAX93081.1| 830|Homo sapiens unknown protein. 28 4.6
U58515-1|AAB04534.1| 424|Homo sapiens chitinase protein. 28 6.1
U58514-1|AAB04533.1| 390|Homo sapiens chitinase precursor protein. 28 6.1
U49835-1|AAC50597.1| 385|Homo sapiens YKL-39 precursor protein. 28 6.1
BT006767-1|AAP35413.1| 390|Homo sapiens chitinase 3-like 2 prot... 28 6.1
BC011460-1|AAH11460.1| 390|Homo sapiens chitinase 3-like 2 prot... 28 6.1
AL513202-1|CAH70799.1| 390|Homo sapiens chitinase 3-like 2 prot... 28 6.1
AK223316-1|BAD97036.1| 378|Homo sapiens chitinase 3-like 2 vari... 28 6.1
>BC040567-1|AAH40567.1| 830|Homo sapiens WD repeat domain 75
protein.
Length = 830
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 211 DYGLFVVKIRGLKFSCFTIVTMFIVARQAKQTNMNLIISL 92
DYGL +++ F CF + RQ K+T + L + L
Sbjct: 382 DYGLIQIELTKAAFGCFGNWLATVEQRQEKETELELQMKL 421
>AL122097-1|CAB59265.1| 705|Homo sapiens hypothetical protein
protein.
Length = 705
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 211 DYGLFVVKIRGLKFSCFTIVTMFIVARQAKQTNMNLIISL 92
DYGL +++ F CF + RQ K+T + L + L
Sbjct: 257 DYGLIQIELTKAAFGCFGNWLATVEQRQEKETELELQMKL 296
>AK023276-1|BAB14503.1| 551|Homo sapiens protein ( Homo sapiens
cDNA FLJ13214 fis, clone NT2RP4001336. ).
Length = 551
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 211 DYGLFVVKIRGLKFSCFTIVTMFIVARQAKQTNMNLIISL 92
DYGL +++ F CF + RQ K+T + L + L
Sbjct: 160 DYGLIQIELTKAAFGCFGNWLATVEQRQEKETELELQMKL 199
>AK022607-1|BAB14126.1| 773|Homo sapiens protein ( Homo sapiens
cDNA FLJ12545 fis, clone NT2RM4000611, weakly similar to
VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1. ).
Length = 773
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 211 DYGLFVVKIRGLKFSCFTIVTMFIVARQAKQTNMNLIISL 92
DYGL +++ F CF + RQ K+T + L + L
Sbjct: 382 DYGLIQIELTKAAFGCFGNWLATVEQRQEKETELELQMKL 421
>AK022581-1|BAB14111.1| 782|Homo sapiens protein ( Homo sapiens
cDNA FLJ12519 fis, clone NT2RM2001813. ).
Length = 782
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 211 DYGLFVVKIRGLKFSCFTIVTMFIVARQAKQTNMNLIISL 92
DYGL +++ F CF + RQ K+T + L + L
Sbjct: 382 DYGLIQIELTKTAFGCFGNWLATVEQRQEKETELELQMKL 421
>AC013439-1|AAX93081.1| 830|Homo sapiens unknown protein.
Length = 830
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 211 DYGLFVVKIRGLKFSCFTIVTMFIVARQAKQTNMNLIISL 92
DYGL +++ F CF + RQ K+T + L + L
Sbjct: 382 DYGLIQIELTKAAFGCFGNWLATVEQRQEKETELELQMKL 421
>U58515-1|AAB04534.1| 424|Homo sapiens chitinase protein.
Length = 424
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 158 NSYDVYRCQTSKANKYELDYFFESSWELPLIVSLKSEVYLIWKYQRRITSYY 3
NSY V + L + F SWE PLI S + W+ R +SYY
Sbjct: 227 NSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQ-DRGPSSYY 277
>U58514-1|AAB04533.1| 390|Homo sapiens chitinase precursor protein.
Length = 390
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 158 NSYDVYRCQTSKANKYELDYFFESSWELPLIVSLKSEVYLIWKYQRRITSYY 3
NSY V + L + F SWE PLI S + W+ R +SYY
Sbjct: 193 NSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQ-DRGPSSYY 243
>U49835-1|AAC50597.1| 385|Homo sapiens YKL-39 precursor protein.
Length = 385
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 158 NSYDVYRCQTSKANKYELDYFFESSWELPLIVSLKSEVYLIWKYQRRITSYY 3
NSY V + L + F SWE PLI S + W+ R +SYY
Sbjct: 188 NSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQ-DRGPSSYY 238
>BT006767-1|AAP35413.1| 390|Homo sapiens chitinase 3-like 2
protein.
Length = 390
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 158 NSYDVYRCQTSKANKYELDYFFESSWELPLIVSLKSEVYLIWKYQRRITSYY 3
NSY V + L + F SWE PLI S + W+ R +SYY
Sbjct: 193 NSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQ-DRGPSSYY 243
>BC011460-1|AAH11460.1| 390|Homo sapiens chitinase 3-like 2
protein.
Length = 390
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 158 NSYDVYRCQTSKANKYELDYFFESSWELPLIVSLKSEVYLIWKYQRRITSYY 3
NSY V + L + F SWE PLI S + W+ R +SYY
Sbjct: 193 NSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQ-DRGPSSYY 243
>AL513202-1|CAH70799.1| 390|Homo sapiens chitinase 3-like 2
protein.
Length = 390
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 158 NSYDVYRCQTSKANKYELDYFFESSWELPLIVSLKSEVYLIWKYQRRITSYY 3
NSY V + L + F SWE PLI S + W+ R +SYY
Sbjct: 193 NSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQ-DRGPSSYY 243
>AK223316-1|BAD97036.1| 378|Homo sapiens chitinase 3-like 2 variant
protein.
Length = 378
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 158 NSYDVYRCQTSKANKYELDYFFESSWELPLIVSLKSEVYLIWKYQRRITSYY 3
NSY V + L + F SWE PLI S + W+ R +SYY
Sbjct: 181 NSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQ-DRGPSSYY 231
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,051,544
Number of Sequences: 237096
Number of extensions: 537700
Number of successful extensions: 1088
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 76,859,062
effective HSP length: 58
effective length of database: 63,107,494
effective search space used: 1325257374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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