Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e24
         (240 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001256-1|AAN71012.1|  383|Drosophila melanogaster AT01668p pro...    26   8.1  
AY094720-1|AAM11073.1|  367|Drosophila melanogaster GH18838p pro...    26   8.1  
AE014297-366|AAN14327.1|  187|Drosophila melanogaster CG10999-PC...    26   8.1  
AE014297-364|AAN14325.1|  383|Drosophila melanogaster CG10999-PB...    26   8.1  
AE014297-363|AAF51947.1|  383|Drosophila melanogaster CG10999-PA...    26   8.1  
AE013599-616|AAF59114.3| 4699|Drosophila melanogaster CG33087-PC...    26   8.1  

>BT001256-1|AAN71012.1|  383|Drosophila melanogaster AT01668p
           protein.
          Length = 383

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 117 VCFACLATINIVTIVKHENFKPRILTTKRP*SIFGTQK 230
           +C  C    N   + KHE    R+LTTKR   IF   K
Sbjct: 226 LCRYCGRHFNTDRLAKHEEVCQRMLTTKR--KIFDASK 261


>AY094720-1|AAM11073.1|  367|Drosophila melanogaster GH18838p
           protein.
          Length = 367

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 117 VCFACLATINIVTIVKHENFKPRILTTKRP*SIFGTQK 230
           +C  C    N   + KHE    R+LTTKR   IF   K
Sbjct: 210 LCRYCGRHFNTDRLAKHEEVCQRMLTTKR--KIFDASK 245


>AE014297-366|AAN14327.1|  187|Drosophila melanogaster CG10999-PC,
           isoform C protein.
          Length = 187

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 117 VCFACLATINIVTIVKHENFKPRILTTKRP*SIFGTQK 230
           +C  C    N   + KHE    R+LTTKR   IF   K
Sbjct: 30  LCRYCGRHFNTDRLAKHEEVCQRMLTTKR--KIFDASK 65


>AE014297-364|AAN14325.1|  383|Drosophila melanogaster CG10999-PB,
           isoform B protein.
          Length = 383

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 117 VCFACLATINIVTIVKHENFKPRILTTKRP*SIFGTQK 230
           +C  C    N   + KHE    R+LTTKR   IF   K
Sbjct: 226 LCRYCGRHFNTDRLAKHEEVCQRMLTTKR--KIFDASK 261


>AE014297-363|AAF51947.1|  383|Drosophila melanogaster CG10999-PA,
           isoform A protein.
          Length = 383

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 117 VCFACLATINIVTIVKHENFKPRILTTKRP*SIFGTQK 230
           +C  C    N   + KHE    R+LTTKR   IF   K
Sbjct: 226 LCRYCGRHFNTDRLAKHEEVCQRMLTTKR--KIFDASK 261


>AE013599-616|AAF59114.3| 4699|Drosophila melanogaster CG33087-PC
            protein.
          Length = 4699

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 77   IPMSFQRNNQVHICLLCLSGNDKHRNYCETREFQTSNF 190
            IP+    +N  H    C  G+D+ R+YC  R+   ++F
Sbjct: 2590 IPLELTCDNVTH----CADGSDEFRSYCIFRQCPETHF 2623


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,296,771
Number of Sequences: 53049
Number of extensions: 170534
Number of successful extensions: 528
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 24,988,368
effective HSP length: 59
effective length of database: 21,858,477
effective search space used: 437169540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)