Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e24
         (240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical pr...    29   0.33 
U28943-5|AAA68359.2|  435|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z68011-5|CAB60293.1|  332|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z68004-10|CAB60291.1|  332|Caenorhabditis elegans Hypothetical p...    26   3.1  
AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical ...    26   3.1  
Z70035-7|CAA93867.1|  369|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z70279-6|CAA94244.2|  720|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z49071-8|CAA88878.2|  322|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U97008-13|AAB52303.1|  335|Caenorhabditis elegans Serpentine rec...    25   5.4  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U64605-8|AAF98602.1|  472|Caenorhabditis elegans Sorting nexin p...    25   5.4  
AL023841-4|CAC42359.1|  720|Caenorhabditis elegans Hypothetical ...    25   5.4  
AF003146-2|AAB54201.1|  228|Caenorhabditis elegans Hypothetical ...    25   5.4  
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    25   5.4  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z78059-2|CAH04726.2|  538|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AL021504-1|CAA16428.3|  325|Caenorhabditis elegans Hypothetical ...    25   7.2  

>Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical
           protein F43A11.4 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 196 VVKIRGL-KFSCFTIVTMFIVARQAKQTNMNLIISLKAHGNC 74
           V+ I G+   +C T++    +    ++T+ NLI S +A GNC
Sbjct: 17  VMTINGVFGITCNTLIIASFIRSPTERTSFNLICSYRAVGNC 58


>U28943-5|AAA68359.2|  435|Caenorhabditis elegans Hypothetical
           protein E04F6.6 protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 122 ANKYELDYFFESSWELPLIVSLKSE 48
           AN YE  Y ++S W +PL+ SL  E
Sbjct: 328 ANWYEGKYGYKSGWSVPLVQSLGIE 352


>Z68011-5|CAB60293.1|  332|Caenorhabditis elegans Hypothetical
           protein T21B6.5 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 102 IKFIFVCFACLATINIVTIVKHENFKPRILTT 197
           I     C  CL TI I  +++  +FK + L T
Sbjct: 58  IPLFITCCQCLVTIGICLVLRWGSFKTKYLKT 89


>Z68004-10|CAB60291.1|  332|Caenorhabditis elegans Hypothetical
           protein T21B6.5 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 102 IKFIFVCFACLATINIVTIVKHENFKPRILTT 197
           I     C  CL TI I  +++  +FK + L T
Sbjct: 58  IPLFITCCQCLVTIGICLVLRWGSFKTKYLKT 89


>AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical
           protein F18A12.5 protein.
          Length = 700

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 211 DYGLFVVKIRGLKFSCFTIVTMFIVARQAKQTNMNLIISLKAHG 80
           D+GLF +++R L F  F +       +   Q    ++  LKA+G
Sbjct: 196 DFGLFKLELRKLAFGHFAVFVSSKQEQNIHQLEKTILGILKANG 239


>Z70035-7|CAA93867.1|  369|Caenorhabditis elegans Hypothetical
           protein R09D1.7 protein.
          Length = 369

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 161 HNSYDVYRCQTSKANKYELDY-FFESSWE 78
           H+S   Y C+T ++NKY +   F+   W+
Sbjct: 220 HHSVQSYVCKTDQSNKYNIAIPFYTMLWK 248


>Z70279-6|CAA94244.2|  720|Caenorhabditis elegans Hypothetical
           protein K11E8.1c protein.
          Length = 720

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 209 LWPFCCQNSRFEILVFHNS---YDVYRCQTSKANKYE 108
           L+  C   SR  IL+  N+   Y  Y C T+K + YE
Sbjct: 391 LFEVCPHTSRSHILLRDNTKNIYHPYHCFTNKMSNYE 427


>Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical
           protein R04D3.6 protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 96  EIIK--FIFVCFACLATINIVTIVKHENF 176
           EI+K  F F C  CL+ I ++ IVK + F
Sbjct: 129 EILKTYFTFYCPFCLSFILVIIIVKTQTF 157


>Z49071-8|CAA88878.2|  322|Caenorhabditis elegans Hypothetical
           protein T22C8.6 protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 122 ANKYELDYFFESSWELPLIVSLKSE 48
           AN Y+  Y +++ W +PL+ SL  E
Sbjct: 218 ANWYDGKYGYKNHWNIPLVQSLGVE 242


>U97008-13|AAB52303.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein14 protein.
          Length = 335

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 113 ICLLCLSGNDKHRNYCETR---EFQTSNFD 193
           +C LCL  ND+ R+Y  T    E+   ++D
Sbjct: 152 VCELCLYANDEIRDYIRTTFRDEYDVDSYD 181


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -2

Query: 92   ESSWELPLIVSLKSEVYLIWKYQRRITSYY 3
            ++++ELP  + L SE   +W+ +  ++ +Y
Sbjct: 1533 KNNFELPSGIELSSETAAVWRDEGNVSRFY 1562


>U64605-8|AAF98602.1|  472|Caenorhabditis elegans Sorting nexin
           protein 1 protein.
          Length = 472

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 83  MSFQRNNQVHICLLCLSGNDKHRNYCETREFQTSNFDNKKAI 208
           +  QR  Q+   +  L  + + RN C+ R+F T   D  KA+
Sbjct: 180 VGIQRARQLERYICRLIQHPRMRNDCDVRDFLTIESDLPKAV 221


>AL023841-4|CAC42359.1|  720|Caenorhabditis elegans Hypothetical
           protein K11E8.1c protein.
          Length = 720

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 209 LWPFCCQNSRFEILVFHNS---YDVYRCQTSKANKYE 108
           L+  C   SR  IL+  N+   Y  Y C T+K + YE
Sbjct: 391 LFEVCPHTSRSHILLRDNTKNIYHPYHCFTNKMSNYE 427


>AF003146-2|AAB54201.1|  228|Caenorhabditis elegans Hypothetical
           protein F56F4.4 protein.
          Length = 228

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 188 NSRFEILVFHNSYDVYR 138
           N +F++L+FHN+Y   R
Sbjct: 18  NEKFKLLIFHNNYSQKR 34


>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
           protein Y110A7A.16 protein.
          Length = 1250

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -2

Query: 176 EILVFHNSYDVYRCQTSKANKYELDYFFESSWELPLIVSLKSEVYLIWKY 27
           E + ++++  +   QTS   K++L+++  S++E       K    +IWK+
Sbjct: 290 EKIEWNSTGTILSMQTSLGKKHQLEFWHLSNYEFTRKCYWKFSESIIWKW 339


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein
            W05B2.2 protein.
          Length = 1278

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 104  QVHICLLCLSGNDKHRNYC 160
            +V  C +C +G + H+NYC
Sbjct: 1000 RVQKCSMCGAGYECHKNYC 1018


>Z78059-2|CAH04726.2|  538|Caenorhabditis elegans Hypothetical
           protein C34B4.4 protein.
          Length = 538

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 181 GLKFSCFTIVTMFIV 137
           G KF CF IV +FI+
Sbjct: 521 GTKFDCFQIVILFII 535


>Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.12 protein.
          Length = 320

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -2

Query: 143 YRCQTSKANKYELDYFFESSWELPLIVSLKSEVYLIWKYQRRITSY 6
           Y C  +K     +++FF    ELP ++     +Y +  Y++ I  +
Sbjct: 262 YYCIITKNELLFVEFFFPVIVELPAMIDPFISIYFVTPYRKLIIKW 307


>AL021504-1|CAA16428.3|  325|Caenorhabditis elegans Hypothetical
           protein Y61B8B.1 protein.
          Length = 325

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 105 KFIFVCFACLATINIVTI 158
           K +FVC  C +TIN++++
Sbjct: 276 KLMFVCCTCHSTINMISL 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,533,549
Number of Sequences: 27780
Number of extensions: 99259
Number of successful extensions: 282
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)