Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e24
(240 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 22 1.2
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 1.2
M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee homeobox-... 21 2.1
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 21 2.1
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 21 2.8
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 20 3.7
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 20 4.9
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 20 4.9
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 19 6.4
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 19 6.4
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 19 6.4
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 19 6.4
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.8 bits (44), Expect = 1.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 3 IVTGNSSLIFPNQI 44
I T N SL+FPN I
Sbjct: 474 IGTSNLSLVFPNDI 487
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.8 bits (44), Expect = 1.2
Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -2
Query: 134 QTSKANKYEL-----DYFFESSWELPLIVSLKSEVYLI 36
QT +N+ E+ DY+ W++ + ++++E + I
Sbjct: 180 QTEDSNQIEVGIDLTDYYISVEWDIIKVPAVRNEAFYI 217
>M29493-1|AAA27728.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H90. ).
Length = 74
Score = 21.0 bits (42), Expect = 2.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 166 TRISNLEF*QQKGHNRFSAHKRRI 237
TR LE ++ +NR+ +RRI
Sbjct: 16 TRYQTLELEKEFHYNRYLTRRRRI 39
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.0 bits (42), Expect = 2.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 166 TRISNLEF*QQKGHNRFSAHKRRI 237
TR LE ++ +NR+ +RRI
Sbjct: 278 TRYQTLELEKEFHYNRYLTRRRRI 301
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 20.6 bits (41), Expect = 2.8
Identities = 8/32 (25%), Positives = 15/32 (46%)
Frame = -2
Query: 185 SRFEILVFHNSYDVYRCQTSKANKYELDYFFE 90
+ E + + +Y + +Y+LDYF E
Sbjct: 195 NNIETYIVNTNYSSKNMREYNDPEYKLDYFME 226
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 20.2 bits (40), Expect = 3.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 77 LPLIVSLKSEVYLIWKY 27
L LI L E+Y IW +
Sbjct: 101 LLLISGLPPEIYYIWSH 117
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 19.8 bits (39), Expect = 4.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 166 TRISNLEF*QQKGHNRFSAHKRRI 237
TR LE ++ NR+ +RRI
Sbjct: 16 TRYQTLELEKEFHFNRYLTRRRRI 39
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 19.8 bits (39), Expect = 4.9
Identities = 8/32 (25%), Positives = 15/32 (46%)
Frame = -2
Query: 185 SRFEILVFHNSYDVYRCQTSKANKYELDYFFE 90
+ E + + +Y + +Y+LDYF E
Sbjct: 195 NNIETYIVNTNYSSKYMREYNDPEYKLDYFME 226
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 19.4 bits (38), Expect = 6.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +2
Query: 161 ETREFQTSNFDNKKAIIDFRHT 226
E++++ TS+ + DF+HT
Sbjct: 206 ESKKYATSSNSLRNRTHDFQHT 227
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 19.4 bits (38), Expect = 6.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +2
Query: 161 ETREFQTSNFDNKKAIIDFRHT 226
E++++ TS+ + DF+HT
Sbjct: 206 ESKKYATSSNSLRSRTHDFQHT 227
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 19.4 bits (38), Expect = 6.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 31 FQIK*TSDLSDTINGNSH 84
F+ T D SDTI+ +SH
Sbjct: 333 FETLHTMDSSDTIDIDSH 350
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 19.4 bits (38), Expect = 6.4
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -2
Query: 149 DVYRCQTSKANKYELDY 99
D + S+AN Y DY
Sbjct: 126 DAHGTGNSRANTYNFDY 142
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,447
Number of Sequences: 438
Number of extensions: 1171
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4024224
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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