Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e23
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CC403 Cluster: hypothetical protein TTHERM_0013...    33   5.7  
UniRef50_A2RLE2 Cluster: Magnesium and cobalt transport protein;...    33   7.5  
UniRef50_Q501S7 Cluster: Zgc:113301; n=3; Danio rerio|Rep: Zgc:1...    33   9.9  

>UniRef50_UPI00006CC403 Cluster: hypothetical protein
           TTHERM_00133620; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00133620 - Tetrahymena
           thermophila SB210
          Length = 367

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +3

Query: 225 ICLFL*INIVLNSENHSVTPLYENEDKYLISRLNTQII*NVPTTVNKLVLLHNTIID 395
           +CL+  I+ + N++NH++ P+ E  +K  + +   QI  N+    NK++L     ID
Sbjct: 33  MCLYCRIDHIDNNKNHNIIPINEIAEKIQLLQKPQQIQNNIINQANKILLAIQKQID 89


>UniRef50_A2RLE2 Cluster: Magnesium and cobalt transport protein;
           n=3; Lactococcus lactis|Rep: Magnesium and cobalt
           transport protein - Lactococcus lactis subsp. cremoris
           (strain MG1363)
          Length = 301

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +3

Query: 243 INIVLNSENHSVTPLYENEDKYLISRLNTQII*NVPTTVNKLVLLHNTIIDQ*MFEYKRK 422
           + +   ++ + +  LY  E++YLI+++ +  + N P TV +L+ +   +I +  F Y  K
Sbjct: 76  VPVTFVAQKNRLITLYHPENEYLINQIKSYCLQNRPQTVYQLLFISLFLISEAFFPYLEK 135


>UniRef50_Q501S7 Cluster: Zgc:113301; n=3; Danio rerio|Rep:
           Zgc:113301 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 165

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 400 KCLNIKGRTDRYSREERFLKSVFCPEHTCQCCAIVSIIFNYYSKT 534
           KC   +  +D YS   R+ + V+CP++T  C AI    FN++ KT
Sbjct: 42  KCFTCEQASDNYSCN-RWAEDVWCPQNTQYCMAIHH--FNHHGKT 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,531,718
Number of Sequences: 1657284
Number of extensions: 11148502
Number of successful extensions: 22884
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22880
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)