Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e23
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical...    29   2.7  
AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical...    29   2.7  
AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical...    28   6.2  
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    28   8.1  

>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = +1

Query: 346 CPLLSTN*C------CYTIQL*IN-KCLNIKGRTDRYSREERFLKSVFCPEHTCQC 492
           CP  ++N C      C+T Q+ +  +C N     DR  R E+ L    C  + CQC
Sbjct: 111 CPNTNSNTCSTTGTPCFTGQISVGGQCFNSVNIGDRCQRSEQCLGGSQCQNNLCQC 166


>AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical
           protein K12H6.6b protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = -2

Query: 419 PFIFKHLLIYNCIV*QH*FVDSSGHILNDL 330
           P +FK  ++Y+CIV ++  +  +G++LNDL
Sbjct: 105 PELFKSPILYHCIVGRNLVLMMTGYLLNDL 134


>AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical
           protein K12H6.6a protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = -2

Query: 419 PFIFKHLLIYNCIV*QH*FVDSSGHILNDL 330
           P +FK  ++Y+CIV ++  +  +G++LNDL
Sbjct: 105 PELFKSPILYHCIVGRNLVLMMTGYLLNDL 134


>AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.28 protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +1

Query: 340 KMCPLLSTN*CCYTIQL*INKCLNIKGRTDRYSREERFLKSVFCPEHT 483
           K   +++ N C YT Q   ++C+  + +  +++ ++RF K   C + T
Sbjct: 595 KNVKVVTCNQCKYTSQFASSECIKKEHKLIKHTADKRFFKCTGCKKRT 642


>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 1 protein.
          Length = 1383

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 448  FPLSNIDPFFLLYSNIY*SIIVLCSSTSLLTVVGTF*MICV 326
            F  S I PF+  YS    +I+ + ++   +TVVG F +ICV
Sbjct: 1111 FAYSKIFPFYEQYS----TIMPILTTQLFITVVGVFGIICV 1147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,077,652
Number of Sequences: 27780
Number of extensions: 294440
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)