Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e22
         (873 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7XGT6 Cluster: Expressed protein; n=10; Oryza sativa|R...    39   0.19 
UniRef50_A2YTD2 Cluster: Putative uncharacterized protein; n=3; ...    36   1.3  
UniRef50_Q95XI3 Cluster: Putative uncharacterized protein; n=1; ...    34   5.4  

>UniRef50_Q7XGT6 Cluster: Expressed protein; n=10; Oryza sativa|Rep:
           Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 301

 Score = 38.7 bits (86), Expect = 0.19
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 713 PTSTSKMGSKAPKCPPQPQKMGSKAPKCPPST 808
           P ST   G+ AP+CPP   + G+ A  CPP T
Sbjct: 237 PPSTPAYGTPAPECPPSTPEYGTPATACPPPT 268



 Score = 38.3 bits (85), Expect = 0.25
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 713 PTSTSKMGSKAPKCPPQPQKMGSKAPKCPPST 808
           PT   + G  AP+ PP     G+ AP+CPPST
Sbjct: 223 PTPAPECGQPAPEYPPSTPAYGTPAPECPPST 254



 Score = 35.5 bits (78), Expect = 1.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 713 PTSTSKMGSKAPKCPPQPQKMGSKAPKCPP 802
           P++    G  AP+CPP     G  AP+CPP
Sbjct: 192 PSTPPGYGQPAPECPPADPGYGQPAPECPP 221


>UniRef50_A2YTD2 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 309

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 88  HTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 201
           H NA  ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 129 HQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 166


>UniRef50_Q95XI3 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 555

 Score = 33.9 bits (74), Expect = 5.4
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = +2

Query: 590 NSRDAKSGRIRI*PYCSKNKREVKHRRAHLNLKNGK*STVVPTSTSKMGSKAPKCPPQPQ 769
           N +D  SG     P C KN   V       +    K S   P + +   + AP  PPQP 
Sbjct: 223 NHKDCSSGSTS--PTCPKNATAVASVTTTASTSTTKTSPTKPPTPTSRPTSAPTIPPQPS 280

Query: 770 KMGSKAP 790
              ++AP
Sbjct: 281 ANSTRAP 287


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 912,058,376
Number of Sequences: 1657284
Number of extensions: 19635249
Number of successful extensions: 55975
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55651
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77882636090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)