Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e22
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0274 - 2901033-2901778,2902475-2902634                           39   0.006
08_01_1059 - 10775143-10776063                                         36   0.042
09_04_0281 - 16360082-16361059,16361608-16361688,16363287-163636...    30   2.1  
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639...    29   4.9  
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365...    29   6.4  
01_06_1106 + 34563368-34563679                                         28   8.5  

>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 713 PTSTSKMGSKAPKCPPQPQKMGSKAPKCPPST 808
           P ST   G+ AP+CPP   + G+ A  CPP T
Sbjct: 237 PPSTPAYGTPAPECPPSTPEYGTPATACPPPT 268



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 713 PTSTSKMGSKAPKCPPQPQKMGSKAPKCPPST 808
           PT   + G  AP+ PP     G+ AP+CPPST
Sbjct: 223 PTPAPECGQPAPEYPPSTPAYGTPAPECPPST 254



 Score = 35.5 bits (78), Expect = 0.056
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 713 PTSTSKMGSKAPKCPPQPQKMGSKAPKCPP 802
           P++    G  AP+CPP     G  AP+CPP
Sbjct: 192 PSTPPGYGQPAPECPPADPGYGQPAPECPP 221



 Score = 32.3 bits (70), Expect = 0.52
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 713 PTSTSKMGSKAPKCPPQP---QKMGSKAPKCPPST 808
           P +    G  AP+CPP P    + G  AP+ PPST
Sbjct: 206 PPADPGYGQPAPECPPPPTPAPECGQPAPEYPPST 240


>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 88  HTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 201
           H NA  ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 125 HQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162


>09_04_0281 -
           16360082-16361059,16361608-16361688,16363287-16363650,
           16363675-16364348
          Length = 698

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 711 CPPQPQKWEVKHRSAHLNLKKWEVKH 788
           CP Q   W ++H    L    W++KH
Sbjct: 428 CPSQQDDWHLQHEGCRLQHDDWQLKH 453


>05_02_0078 -
           6386278-6386291,6386462-6386594,6386721-6388613,
           6391153-6391239,6391691-6391765,6393982-6394327,
           6394428-6394450
          Length = 856

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 673 PPQPQKWEIKHRRAHLNLKNGK 738
           PP PQ +++  R+ H+N++N K
Sbjct: 185 PPSPQTFQVHERQKHINIENMK 206


>05_01_0004 -
           34967-35149,35340-35501,36078-36225,36309-36385,
           36507-36577,36850-37263,37518-38268
          Length = 601

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 701 STVVPTSTSKMGSKAPKCPPQPQKMGSKAPKCPPS 805
           S  +P++T  + +  P  PP P    S +P  PPS
Sbjct: 63  SPPLPSATPPLAASPPPPPPPPPPRNSPSPPKPPS 97


>01_06_1106 + 34563368-34563679
          Length = 103

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 701 STVVPTSTS-KMGSKAPKCPPQPQKMGSKAPKCPPS 805
           S   PTST+ ++G+ + + PP+P ++   A   PP+
Sbjct: 13  SAATPTSTADRLGAASSQAPPRPGRVPPSASAPPPA 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,210,372
Number of Sequences: 37544
Number of extensions: 572562
Number of successful extensions: 1834
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1814
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)