Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e22
         (873 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT015960-1|AAV36845.1|  110|Drosophila melanogaster RH46982p pro...    31   2.7  
AE014296-2592|AAN11770.1|  110|Drosophila melanogaster CG32151-P...    31   2.7  
AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p pro...    30   3.6  
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio...    30   3.6  
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.    30   3.6  
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA...    30   3.6  
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD...    30   3.6  
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB...    30   3.6  
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC...    30   3.6  
AY070912-1|AAL48534.1|  201|Drosophila melanogaster RE02355p pro...    30   4.8  
AE013599-730|AAF59031.1|  201|Drosophila melanogaster CG13746-PA...    30   4.8  
BT029572-1|ABL75631.1|  211|Drosophila melanogaster IP16890p pro...    29   8.4  
AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA...    29   8.4  

>BT015960-1|AAV36845.1|  110|Drosophila melanogaster RH46982p
           protein.
          Length = 110

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 707 RCFISHF*G*GGHDGALLPVYFLSSMVRCGFGRILRPYCLA 585
           RCF SH+   GG   A + +  L++ + C   R  R +CLA
Sbjct: 6   RCFSSHYCEGGGQTNAFVSMSVLNTALECREFRRKRHFCLA 46


>AE014296-2592|AAN11770.1|  110|Drosophila melanogaster CG32151-PA
           protein.
          Length = 110

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 707 RCFISHF*G*GGHDGALLPVYFLSSMVRCGFGRILRPYCLA 585
           RCF SH+   GG   A + +  L++ + C   R  R +CLA
Sbjct: 6   RCFSSHYCEGGGQTNAFVSMSVLNTALECREFRRKRHFCLA 46


>AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p
           protein.
          Length = 1153

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 684 SKMGNKAPSCPPQPQKWEVKHRSAHL 761
           S   ++ PS PPQPQ+++  H S H+
Sbjct: 125 SNSNSQPPSMPPQPQQFQSPHPSPHM 150


>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
            corepressor Atro protein.
          Length = 1985

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 684  SKMGNKAPSCPPQPQKWEVKHRSAHL 761
            S   ++ PS PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982


>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
          Length = 1966

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 684  SKMGNKAPSCPPQPQKWEVKHRSAHL 761
            S   ++ PS PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
            isoform A protein.
          Length = 1966

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 684  SKMGNKAPSCPPQPQKWEVKHRSAHL 761
            S   ++ PS PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
            isoform D protein.
          Length = 1985

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 684  SKMGNKAPSCPPQPQKWEVKHRSAHL 761
            S   ++ PS PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
            isoform B protein.
          Length = 1985

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 684  SKMGNKAPSCPPQPQKWEVKHRSAHL 761
            S   ++ PS PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982


>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
            isoform C protein.
          Length = 1988

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 684  SKMGNKAPSCPPQPQKWEVKHRSAHL 761
            S   ++ PS PPQPQ+++  H S H+
Sbjct: 957  SNSNSQPPSMPPQPQQFQSPHPSPHM 982


>AY070912-1|AAL48534.1|  201|Drosophila melanogaster RE02355p
           protein.
          Length = 201

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +3

Query: 561 Y*TLPTQHS*TV-GTQNPAESASNHTAQKINGK*----STVVPTSTSKMGNKAPSCPPQP 725
           Y TL T+ +  V   +  AE+ S     + NGK      T VPT+++K G+K P   PQ 
Sbjct: 106 YGTLQTKKTVEVHANEEAAEAQSAPPTAETNGKAPPATKTPVPTNSTKDGDKKPVAKPQE 165

Query: 726 Q 728
           Q
Sbjct: 166 Q 166


>AE013599-730|AAF59031.1|  201|Drosophila melanogaster CG13746-PA
           protein.
          Length = 201

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +3

Query: 561 Y*TLPTQHS*TV-GTQNPAESASNHTAQKINGK*----STVVPTSTSKMGNKAPSCPPQP 725
           Y TL T+ +  V   +  AE+ S     + NGK      T VPT+++K G+K P   PQ 
Sbjct: 106 YGTLQTKKTVEVHANEEAAEAQSAPPTAETNGKAPPATKTPVPTNSTKDGDKKPVAKPQE 165

Query: 726 Q 728
           Q
Sbjct: 166 Q 166


>BT029572-1|ABL75631.1|  211|Drosophila melanogaster IP16890p
           protein.
          Length = 211

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +2

Query: 635 CSKNKREVKHRRAHLNLKNGK*STVVPTSTSKMGSKAPKCPPQPQKMGSKAPKCPPST 808
           C   +RE  H+R H N   G+    +    S+ G      P QP KMG   P    ST
Sbjct: 156 CMDYEREHSHQRHHFNY--GETKRPIQNQNSR-GKIVKNSPSQPMKMGFFRPSDSSST 210


>AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA
            protein.
          Length = 2284

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 713  PTSTSKMGSKAPKCPPQPQKMGSKAPKCPPST 808
            PTS S++ +  P+C P     GSK P+C P+T
Sbjct: 1622 PTSRSQITTLKPRCYP-----GSKDPECQPAT 1648


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,676,712
Number of Sequences: 53049
Number of extensions: 953844
Number of successful extensions: 2994
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2967
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4229643912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)