Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e22
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    34   0.15 
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     30   2.5  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    30   2.5  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    30   2.5  
AF040652-7|AAB95017.1|  210|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    29   4.3  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = +2

Query: 590 NSRDAKSGRIRI*PYCSKNKREVKHRRAHLNLKNGK*STVVPTSTSKMGSKAPKCPPQPQ 769
           N +D  SG     P C KN   V       +    K S   P + +   + AP  PPQP 
Sbjct: 223 NHKDCSSGSTS--PTCPKNATAVASVTTTASTSTTKTSPTKPPTPTSRPTSAPTIPPQPS 280

Query: 770 KMGSKAP 790
              ++AP
Sbjct: 281 ANSTRAP 287


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 716 TSTSKMGSKAPKCPPQPQKMGSKAPKCPPS 805
           +S++  GS  P  PP P  + S  P+ PP+
Sbjct: 188 SSSTSAGSSIPHAPPPPVPLTSNIPQAPPA 217


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 716 TSTSKMGSKAPKCPPQPQKMGSKAPKCPPS 805
           +S++  GS  P  PP P  + S  P+ PP+
Sbjct: 174 SSSTSAGSSIPHAPPPPVPLTSNIPQAPPA 203


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 716 TSTSKMGSKAPKCPPQPQKMGSKAPKCPPS 805
           +S++  GS  P  PP P  + S  P+ PP+
Sbjct: 174 SSSTSAGSSIPHAPPPPVPLTSNIPQAPPA 203


>AF040652-7|AAB95017.1|  210|Caenorhabditis elegans Hypothetical
           protein T05A8.6 protein.
          Length = 210

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 701 STVVPTSTSKMGSKAPKCPPQPQKMGSKAPKCPPSTXHIL 820
           +T V T+T+   +KAP C        +KAP C   +  IL
Sbjct: 78  ATTVTTTTAPTTTKAPDCTTTTAPTTTKAPDCTTCSQDIL 117


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = -2

Query: 317 GCIFFCYVTEGDLVDASSDVAGRDMLLLRDEAVEDASPSGTAVLPNPGNPRPRASAKTIK 138
           GC  + Y  +  ++     V G   L  R    E+    GTA  P+  NP P  + + I 
Sbjct: 12  GC--YVYAQDAQILPVGGQVGGGQRLPCRGRN-EEYKTCGTACEPSCTNPNPMCTKQCIN 68

Query: 137 TIPRC 123
            + +C
Sbjct: 69  NVCQC 73


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = -2

Query: 302  CYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRPRASA 150
            C +TE   VD   DV G      RD+L ++DE   ++ED  P      P   +P P A+ 
Sbjct: 1670 CDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEPEATV 1725

Query: 149  KTIK 138
              ++
Sbjct: 1726 GAVQ 1729


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
 Frame = -2

Query: 302  CYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRPRASA 150
            C +TE   VD   DV G      RD+L ++DE   ++ED  P      P   +P P A+ 
Sbjct: 1670 CDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEPEATV 1725

Query: 149  KTIK 138
              ++
Sbjct: 1726 GAVQ 1729


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,304,403
Number of Sequences: 27780
Number of extensions: 483406
Number of successful extensions: 1499
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)