Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e21
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    29   0.73 
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    29   0.97 
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   3.0  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   6.8  

>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -2

Query: 655 EMNCKSKYHLCAVVIRMSSVTKRARAKRIRLPLEIIDTILQYLDPIS 515
           + +C++K  LC   + ++ + +RA    I+  + +ID +LQ+  PIS
Sbjct: 402 QQSCEAKLLLCTRSL-LAHLDERAPVSTIQDDMSVIDDLLQWKGPIS 447


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 226 FLWYKLARKLIEHERQMDRCVTPSTVQINLYD-DNED 119
           FLW+  + K ++ E+++D  VT     ++LY  DNE+
Sbjct: 52  FLWFGFSSKNVKFEQKLDLAVTCLDTIVSLYAVDNEE 88


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 649 SSLSLNCAFIALSKSPLSASISQANKPPNLFRST 750
           ++L L  +F A    PL + +SQ+N PP L  S+
Sbjct: 260 TNLQLAPSFAAPQAHPLPSHLSQSNVPPQLSHSS 293


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 740 NKLGGLFAWEIDADNGDLLNAMNAQFKLRDEL 645
           N   G   WE+D D  D +    A  +++DE+
Sbjct: 295 NCTNGYLTWELDPDEKDPMGKQEAIAEIQDEI 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,590
Number of Sequences: 5004
Number of extensions: 62078
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)