Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e21
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical pr... 35 0.073
Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical pr... 35 0.073
AF024500-2|AAB70360.1| 467|Caenorhabditis elegans Hypothetical ... 34 0.13
Z54342-3|CAA91154.1| 394|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z66524-7|CAA91419.2| 626|Caenorhabditis elegans Hypothetical pr... 32 0.39
U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical pr... 31 0.90
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF098997-6|AAC68716.1| 410|Caenorhabditis elegans Hypothetical ... 30 1.6
Z54342-5|CAA91147.1| 457|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z49913-6|CAA90145.2| 460|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z70035-1|CAA93861.1| 432|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z70035-3|CAA93863.1| 435|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z47745-4|CAA87665.2| 445|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF039051-6|AAB94266.2| 448|Caenorhabditis elegans Hypothetical ... 29 4.8
Z70035-4|CAA93864.2| 410|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z54342-4|CAA91150.1| 447|Caenorhabditis elegans Hypothetical pr... 28 8.4
AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical ... 28 8.4
AF039051-4|AAB94264.1| 539|Caenorhabditis elegans Hypothetical ... 28 8.4
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ... 28 8.4
>Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical
protein F15A4.8b protein.
Length = 808
Score = 34.7 bits (76), Expect = 0.073
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADNGDLLNAM 675
K KY+ R +GG+ W +D D+G LL A+
Sbjct: 771 KTKYIKRVNIGGVCLWAVDMDDGTLLEAV 799
Score = 34.3 bits (75), Expect = 0.097
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADN--GDLLNAMNAQ 666
K KYV KLGG++ W +D D+ G LLNA +A+
Sbjct: 372 KKKYVCDMKLGGVWIWTVDMDDSAGSLLNASSAR 405
>Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical
protein F15A4.8a protein.
Length = 755
Score = 34.7 bits (76), Expect = 0.073
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADNGDLLNAM 675
K KY+ R +GG+ W +D D+G LL A+
Sbjct: 718 KTKYIKRVNIGGVCLWAVDMDDGTLLEAV 746
Score = 34.3 bits (75), Expect = 0.097
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADN--GDLLNAMNAQ 666
K KYV KLGG++ W +D D+ G LLNA +A+
Sbjct: 349 KKKYVCDMKLGGVWIWTVDMDDSAGSLLNASSAR 382
>AF024500-2|AAB70360.1| 467|Caenorhabditis elegans Hypothetical
protein K06H6.4 protein.
Length = 467
Score = 33.9 bits (74), Expect = 0.13
Identities = 32/108 (29%), Positives = 51/108 (47%)
Frame = -2
Query: 577 KRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTDQF 398
+R+ + E T++ YLD I +A + L RVK +++DNN TP Y D+
Sbjct: 276 ERLEIRNEQFKTVVDYLDSIHNASIANLRFRVKW-VIKDNN-------TPERYE--NDKQ 325
Query: 397 ICNYLGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLT 254
I + + + T L F + C PE+V I+T++ PLT
Sbjct: 326 ITDEMLFHKYQNTSQLGNF--FDQPKCII----RPENVAIMTIHGPLT 367
>Z54342-3|CAA91154.1| 394|Caenorhabditis elegans Hypothetical
protein C08H9.6 protein.
Length = 394
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADNGD--LLNAMNA 669
KV YV +GGL W +D D+ D LLNA+ +
Sbjct: 335 KVIYVRNKNIGGLVIWNVDQDDNDNSLLNALTS 367
>Z66524-7|CAA91419.2| 626|Caenorhabditis elegans Hypothetical
protein T13H5.3 protein.
Length = 626
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADN--GDLLNAMNAQ 666
KV Y+ N +GG+ W ID D+ G LLN+ A+
Sbjct: 356 KVDYIVENNIGGVMIWAIDFDDDQGTLLNSAAAE 389
>U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical
protein C31H1.1 protein.
Length = 693
Score = 31.1 bits (67), Expect = 0.90
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 141 FICTVDGVTQRSI*RSCSINFLANLYHKNCLDKKFSNDVNGRFNVTMRTSSGMHLLKNAQ 320
++ ++ +++ SI RS NFL + H+ L + + FN R + HL + Q
Sbjct: 31 YVKNIENISKESINRSVLNNFLETVVHQKSLPFEILRTMTDHFNYGPRLNFN-HLHQQQQ 89
Query: 321 L---ALPNESKGTKYG 359
L +P+E G K G
Sbjct: 90 LHSTIIPSEYLGDKSG 105
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 175 DRCVTPSTVQINLYDDNED-YLNCFDCCIVDCNINDMNRCP 56
D+ V + + DNE Y+N D + +C IN+ N CP
Sbjct: 754 DQSVCCGATDMGVCPDNEKAYINSMDGTVRECLINEHNSCP 794
>AF098997-6|AAC68716.1| 410|Caenorhabditis elegans Hypothetical
protein T10D4.3 protein.
Length = 410
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADNGDLLNAM 675
K+KYV LGG++ W +DA N LL+++
Sbjct: 359 KMKYVKEKNLGGVWIWHVDA-NEKLLDSV 386
>Z54342-5|CAA91147.1| 457|Caenorhabditis elegans Hypothetical
protein C08H9.10 protein.
Length = 457
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADNGD 690
K +YV + +GG+ W ID D+GD
Sbjct: 408 KNRYVADHNIGGITMWTIDQDDGD 431
>Z49913-6|CAA90145.2| 460|Caenorhabditis elegans Hypothetical
protein ZK938.6 protein.
Length = 460
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADNGD 690
K +YV + +GG+ W ID D+GD
Sbjct: 411 KNRYVADHNIGGITMWTIDQDDGD 434
>Z70035-1|CAA93861.1| 432|Caenorhabditis elegans Hypothetical
protein R09D1.1 protein.
Length = 432
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADN--GDLLNAMNA 669
K++YV+ LGG++ W +D D+ LL+A+++
Sbjct: 384 KLQYVNEMNLGGVWIWSVDMDDRINTLLDAVSS 416
>Z70035-3|CAA93863.1| 435|Caenorhabditis elegans Hypothetical
protein R09D1.3 protein.
Length = 435
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADNGDLLNAM 675
K+ YV++ LGG++ W +D D D LN +
Sbjct: 387 KLDYVNKMDLGGVWIWSVDMD--DRLNTL 413
>Z47745-4|CAA87665.2| 445|Caenorhabditis elegans Hypothetical
protein T19H5.1 protein.
Length = 445
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -1
Query: 767 LGKVKYVDRNKLGGLFAWEIDADN--GDLLNAMN 672
+ K++YV + LGG+ W +D D+ LNA++
Sbjct: 379 VAKIEYVSEHLLGGICIWTVDKDDEGNSQLNAIS 412
>AF039051-6|AAB94266.2| 448|Caenorhabditis elegans Hypothetical
protein C14C6.8 protein.
Length = 448
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 577 KRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDY 443
+R+ + E T++ YLD I +A V L RVK + +N Y
Sbjct: 257 ERLEIRNEQFKTVVDYLDSIHNASVANLHFRVKWVMKHNNTPARY 301
>Z70035-4|CAA93864.2| 410|Caenorhabditis elegans Hypothetical
protein R09D1.4 protein.
Length = 410
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADN 696
K++YV LGG++ W +D D+
Sbjct: 356 KIEYVMNKNLGGVWIWSVDMDD 377
>Z54342-4|CAA91150.1| 447|Caenorhabditis elegans Hypothetical
protein C08H9.7 protein.
Length = 447
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADNGD 690
K KYV +GG+ W ID D+ D
Sbjct: 398 KTKYVADYNIGGITMWTIDQDDDD 421
>AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical
protein Y32F6A.3 protein.
Length = 655
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 646 SSSLSLNCAFIALSKSPLSASISQANKPPNLFRSTYLT 759
+SS+ +A K+PLSAS+S N+P + T L+
Sbjct: 532 TSSVPTTPTGLAAPKTPLSASVSATNEPDSTTNGTPLS 569
>AF039051-4|AAB94264.1| 539|Caenorhabditis elegans Hypothetical
protein C14C6.6 protein.
Length = 539
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 577 KRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDY 443
+RI + E T+ YLD I ++ + L RVK L +N Y
Sbjct: 328 ERIEIRSENFKTVTSYLDSIHNSSISNLHFRVKWVLKHNNTPATY 372
>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
protein F07G11.9 protein.
Length = 2025
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 761 KVKYVDRNKLGGLFAWEIDADN--GDLLNAMNA 669
K+KY LGGL W +D D+ LLN +++
Sbjct: 1823 KMKYATDRNLGGLMIWALDLDDDADTLLNLVSS 1855
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,383
Number of Sequences: 27780
Number of extensions: 356492
Number of successful extensions: 1061
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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