Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e19
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 29 0.62
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 29 0.62
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 29 0.62
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 29 0.62
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 29 0.62
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 29 0.62
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 29 0.62
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 29 0.62
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 29 0.62
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 29 0.62
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 29 0.62
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 29 0.62
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 28 1.9
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 28 1.9
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 27 2.5
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 3.3
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 27 4.4
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 27 4.4
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 5.8
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 26 5.8
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 26 5.8
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 26 7.6
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 512 FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMM-HKKDELLQVKDT 342
F+ +I D Q+ + T+++ LN +E +Q KD ++ + KD++L DT
Sbjct: 850 FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDT 909
Query: 341 QVSNLIAK 318
Q++ I K
Sbjct: 910 QLTRTIIK 917
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 512 FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMM-HKKDELLQVKDT 342
F+ +I D Q+ + T+++ LN +E +Q KD ++ + KD++L DT
Sbjct: 850 FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDT 909
Query: 341 QVSNLIAK 318
Q++ I K
Sbjct: 910 QLTRTIIK 917
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 512 FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMM-HKKDELLQVKDT 342
F+ +I D Q+ + T+++ LN +E +Q KD ++ + KD++L DT
Sbjct: 850 FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDT 909
Query: 341 QVSNLIAK 318
Q++ I K
Sbjct: 910 QLTRTIIK 917
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 512 FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMM-HKKDELLQVKDT 342
F+ +I D Q+ + T+++ LN +E +Q KD ++ + KD++L DT
Sbjct: 850 FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDT 909
Query: 341 QVSNLIAK 318
Q++ I K
Sbjct: 910 QLTRTIIK 917
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 512 FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMM-HKKDELLQVKDT 342
F+ +I D Q+ + T+++ LN +E +Q KD ++ + KD++L DT
Sbjct: 850 FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDT 909
Query: 341 QVSNLIAK 318
Q++ I K
Sbjct: 910 QLTRTIIK 917
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 29.5 bits (63), Expect = 0.62
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 488 KDKQIEAKDLQ-VTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNLIAK 318
++ Q ++D Q +T+ TD+ Q+ + DE KK ELL+ K+ + K
Sbjct: 274 RNHQFHSRDSQPITQRHTDIESRLQKMQDNAKELDESRRKKIELLEKKERDEEQFLEK 331
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 512 FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMM-HKKDELLQVKDT 342
F+ +I D Q+ + T+++ LN +E +Q KD ++ + KD++L DT
Sbjct: 850 FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDT 909
Query: 341 QVSNLIAK 318
Q++ I K
Sbjct: 910 QLTRTIIK 917
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 512 FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMM-HKKDELLQVKDT 342
F+ +I D Q+ + T+++ LN +E +Q KD ++ + KD++L DT
Sbjct: 850 FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDT 909
Query: 341 QVSNLIAK 318
Q++ I K
Sbjct: 910 QLTRTIIK 917
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 512 FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMM-HKKDELLQVKDT 342
F+ +I D Q+ + T+++ LN +E +Q KD ++ + KD++L DT
Sbjct: 850 FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDT 909
Query: 341 QVSNLIAK 318
Q++ I K
Sbjct: 910 QLTRTIIK 917
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 512 FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMM-HKKDELLQVKDT 342
F+ +I D Q+ + T+++ LN +E +Q KD ++ + KD++L DT
Sbjct: 850 FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDT 909
Query: 341 QVSNLIAK 318
Q++ I K
Sbjct: 910 QLTRTIIK 917
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 512 FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMM-HKKDELLQVKDT 342
F+ +I D Q+ + T+++ LN +E +Q KD ++ + KD++L DT
Sbjct: 850 FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDT 909
Query: 341 QVSNLIAK 318
Q++ I K
Sbjct: 910 QLTRTIIK 917
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 512 FIERIIAIKD--KQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMM-HKKDELLQVKDT 342
F+ +I D Q+ + T+++ LN +E +Q KD ++ + KD++L DT
Sbjct: 850 FVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDT 909
Query: 341 QVSNLIAK 318
Q++ I K
Sbjct: 910 QLTRTIIK 917
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 142 IFSTTMLAASMLRLCFWLSTYVFWPVIAVNVV 237
I TM+ LR +WLST +F P++ V+
Sbjct: 702 IMQLTMMGLMSLRKAYWLSTVIF-PLLCFTVI 732
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3
Query: 227 TAITGQKTYVESQKHKRNIDAANIVVENIRPNPTVDWNNATDRLQSKRSKRSI 69
T GQ++ +SQ N A V +P +WN+A + SK++K+ +
Sbjct: 940 TGKDGQQSNNKSQSELGNSSGAWSQVVRNKPKQGTEWNSAFKVVTSKKNKKRV 992
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 119 WNNATDRLQSKRSKRSISFDSLEEAQQF 36
W+ A+D+++ R FDS E AQ+F
Sbjct: 23 WDEASDQVKGYGGNRYKKFDSYEAAQEF 50
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 316 ILAIKLETCVSLTCNNSSFL-CIISSFLCIVS*NPVYMRLRSVITRVTCKSLASICLSLI 492
I I+LE V+ C N + + C S+ CIV R + I+R TC + + +++
Sbjct: 93 IKTIELEATVNCLCVNENLVVCGCSNSSCIVYSWNAEQRNLTEISRFTCSEIIPLEFAIV 152
Query: 493 AMMRSI 510
+ I
Sbjct: 153 KLDHGI 158
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 640 CGVVLARA*HLRNYFF*KPFL*FYGVRKLAL 732
CG++L A L YFF L +G+RK+AL
Sbjct: 86 CGLILTLA--LEVYFFSTALLKLFGLRKIAL 114
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -1
Query: 193 AKSTNVTSTL--PTLWWRISGLILPSIGTTPLIGYKVNVASE 74
A+ T T+ + P++W R+ G +L T L+G ++ ++S+
Sbjct: 104 AEETKPTTVVKKPSIWQRVKGGVLHFWDGTKLLGVEIKISSK 145
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +1
Query: 187 FWLSTYVFWPVIAVNVVPSRVTHSTGCLRLSAGY*TARSDKSIILAIKLETCVSLTCNNS 366
FW TY+F ++ + + + C + Y S L+ + +C+ + CN+S
Sbjct: 226 FWERTYMFLELLPLQSI------TAACESILKDYLLNLVKTSESLSSQQMSCLRICCNSS 279
Query: 367 SFLCIISSF 393
SF SF
Sbjct: 280 SFWSAADSF 288
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 142 IFSTTMLAASMLRLCFWLSTYVFWPVIAVNVVPSR 246
+F+ T+ A ++ LCF+ Y +PV A+ + R
Sbjct: 316 LFTITLSIALLVTLCFYDVKYARYPVFALKSLKDR 350
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 229 NVVPSRVTHSTGCLRLSAGY*TARSDKSIILAI 327
+V+P HS C R S+ Y A +KSI + I
Sbjct: 222 SVIPDSSFHSVACYRASSHYKEAPVEKSIDIDI 254
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 182 KRNIDAANIVVENIRPNPTVDW 117
KR + AN EN++P P DW
Sbjct: 288 KRKAENANRAAENLQPLPLDDW 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,206
Number of Sequences: 5004
Number of extensions: 64711
Number of successful extensions: 250
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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