Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e19
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0524 + 23671376-23671603,23672159-23672392 33 0.28
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480... 32 0.49
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 31 1.5
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 30 2.0
01_06_0195 + 27379266-27379300,27379870-27382174 30 2.0
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 30 2.6
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 30 2.6
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 29 3.5
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 3.5
04_03_0446 - 16012926-16013042,16013266-16013469 29 4.6
03_06_0591 + 34936583-34936674,34937631-34937640,34937716-349378... 29 4.6
03_01_0196 + 1559190-1560395 29 4.6
02_02_0536 + 11304298-11304400,11304731-11305797,11306026-113064... 29 4.6
08_01_0874 + 8575718-8576422,8576603-8576662,8576799-8576945,857... 29 6.1
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 8.1
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 28 8.1
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 28 8.1
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 28 8.1
01_06_0117 + 26605186-26605443,26605540-26605583,26605659-266057... 28 8.1
01_05_0645 - 23899579-23904483 28 8.1
>02_04_0524 + 23671376-23671603,23672159-23672392
Length = 153
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 183 VLLAFHVRLLAGNSRKRSAVARHAQHRMFALVRGVLNRAIRQIYHFGN*IGD 338
+L+AF LL G + R A + A + + +G + I IY+FG+ I D
Sbjct: 9 ILVAFLALLLVGTCQARPAPGKAASSSLSSAAKGAVVDGITDIYNFGDSISD 60
>03_06_0205 -
32347636-32347646,32347762-32347801,32347959-32348060,
32348473-32348599,32348893-32350835,32351347-32351367
Length = 747
Score = 32.3 bits (70), Expect = 0.49
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = -3
Query: 443 MTDLNRMYT-GFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPADKRK 267
M+ L RM+ QE + + +K L D + L K+ + R Q + K
Sbjct: 331 MSKLKRMHELDLQEKTEELFKFKREKGLLTLKNDVEFEPLRKKIPQIISRMDQIISKNIK 390
Query: 266 HPVLCVTRDGTTFTAITGQK---TYVESQKHKRNIDAANI 156
P LC+T DG I+ ++ Y E+Q H R + A N+
Sbjct: 391 MPSLCMTNDGLDERCISAKRIDSLYYENQ-HLRGLLADNM 429
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -3
Query: 329 LIAKMIDLSDRAVQYPADKRKHPVL 255
LIA+++ LSDRA AD+R HPVL
Sbjct: 33 LIAELLLLSDRAPSQFADRRFHPVL 57
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = -3
Query: 545 KKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKD 366
K+ E KK E + I +D++I +DL+ R + + GF M+ KDE + + D
Sbjct: 660 KRLNEQKKKNEKPDLISLFEDQKIMKQDLEEIRKRLYMLELKEGFH--MEEKDEPIQEDD 717
Query: 365 ELLQ 354
++++
Sbjct: 718 QVVE 721
>01_06_0195 + 27379266-27379300,27379870-27382174
Length = 779
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 269 CACPRGIEPRDPTNLSFWQLNWRP 340
C+CP G E RDPTN W RP
Sbjct: 293 CSCPPGYEMRDPTN---WSRGCRP 313
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 29.9 bits (64), Expect = 2.6
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Frame = -3
Query: 368 DELLQVKDTQVSNLIAKMIDLS-DRAVQYPADKRKHPVLCVTRDGTTFTAITGQKTYVES 192
DE ++VK T + K +D++ DRA DKR + D + FT +K S
Sbjct: 145 DEAVKVKATSIR--WKKGMDIANDRAYTKKGDKR------ILIDESFFTWFNSEKN--RS 194
Query: 191 QKHKRNIDAANIVVENIRPNPTVDWNNA-TDRLQSKRSKRSISFDSLEE 48
H + A+++ E++ PNP +NN + L+ +S D EE
Sbjct: 195 FAHGAMDEVADVIKEDLWPNPLKYFNNEFEEELELLDDDDEVSDDDDEE 243
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = -3
Query: 506 ERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNL 327
E I+++ + IE K + ++L ++YTG ++ +K+E + D++ +KD + N
Sbjct: 498 ENSISLQVETIEDKTNFMPEKFSELEKVYTGCEKLNNKKEE-QEENDKINTLKDEKDHNT 556
Query: 326 IAKMIDLSDRAVQYPADKRKHPV 258
+ D VQ P DK K+ V
Sbjct: 557 F-EHTDSIKGEVQLP-DKDKNLV 577
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = -3
Query: 536 EELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKD-EL 360
E L KK+ ++ A D EAKD T D N + + + E HK D E
Sbjct: 118 ERLQKKENAVQAKDA--DATNEAKDADATNEAKDANATNEAYATSTAKHKETSHKTDTEP 175
Query: 359 LQVKDTQVSNLIAKMIDLSDRAVQYPADKRK 267
LQ+ + + ++K + +S+ A ++K++
Sbjct: 176 LQLLKKETT--LSKEVSISNTAKVKSSEKQR 204
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -3
Query: 542 KTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHK 372
K E+ KK E ++ I + IEAKD+ + + + + E ++ +E++ K
Sbjct: 1700 KIEDTDKKIEHLQNAIIKLEGDIEAKDISLEAAREENDTIRKSLAEAQEKNEELLRK 1756
>04_03_0446 - 16012926-16013042,16013266-16013469
Length = 106
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 294 GSIPRGQAQTSGAVRDARRHYVYGYYRPKDVRGKPKAQT 178
G +PRG + G + + RR G +R + G P ++
Sbjct: 22 GGVPRGAEVSGGGLEEERRRQAKGSWRWRQAEGSPAGRS 60
>03_06_0591 +
34936583-34936674,34937631-34937640,34937716-34937831,
34938249-34938261,34939924-34939977,34940020-34940170,
34940619-34940647
Length = 154
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 466 LASICLSLIAMMRSINSCFLKSSSVFLRHHRLQRVCVLGKCRNQFSHQL 612
L SIC +L + R +NSC ++ S +L H + ++ C N H L
Sbjct: 16 LLSICTTLARLPRCLNSCTVRFSLSWLGVHSM---LLMRYCTNVMDHNL 61
>03_01_0196 + 1559190-1560395
Length = 401
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 270 QTSGAVRDARR-HYVYGYYRPKDVRGKPKAQT*HRRCQHCGGE 145
Q+ +++A R H + Y+ PK +RG P A T GG+
Sbjct: 80 QSLAGIKNALRLHAILDYFDPKKIRGLPDADTMTDTLYQAGGD 122
>02_02_0536 +
11304298-11304400,11304731-11305797,11306026-11306416,
11307164-11308041
Length = 812
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = -3
Query: 545 KKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKD 366
K+ +E KK E + + +D++I +DL+ R + + GF M+ KDE + + D
Sbjct: 610 KRLDEQKKKNEKPDLMSLFEDQKIMKQDLEEIRKRLYMLELKEGFH--MEEKDEPIQEDD 667
Query: 365 ELL 357
+++
Sbjct: 668 QVV 670
>08_01_0874 +
8575718-8576422,8576603-8576662,8576799-8576945,
8577390-8577527
Length = 349
Score = 28.7 bits (61), Expect = 6.1
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = -1
Query: 700 RMAF--RRSNSSSAMHGQVRPRN*TTGGKEQTVGD*TDCDIYRAHKRAASGGGAKKPRNF 527
RMA+ RR+ + + RPR T G Q + D + + KR+ SGG + N
Sbjct: 77 RMAYGSRRNAAGTCSETGNRPRRETAG---QDLLDHLKERVNSSRKRSLSGGSSPSSSNT 133
Query: 526 LKSKSLSNASSQL--RTSRLRPKTCK 455
+ SLS++S + + R PKT K
Sbjct: 134 SSAGSLSSSSRSISRQLHRSVPKTRK 159
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/89 (24%), Positives = 37/89 (41%)
Frame = -3
Query: 308 LSDRAVQYPADKRKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNP 129
L+D A+ +PA+KR V C+T TA+ +Y R++ N++
Sbjct: 1687 LADPALDFPAEKRHEMVSCLTNVVVYETAMPLTVSYQVGLSSGRSL--------NVKSAR 1738
Query: 128 TVDWNNATDRLQSKRSKRSISFDSLEEAQ 42
W R+ R+ S S ++ E Q
Sbjct: 1739 IFRWEREESRIFMTRNFGSASLENAERVQ 1767
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -3
Query: 545 KKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKD 366
K+ +E KK E + I +D++I +DL+ R + GF M+ KDE + + D
Sbjct: 945 KRLDEQKKKNEQPDLISLFEDQKIMKQDLEEIRKRLYMLESKEGFH--MEEKDEPIQEDD 1002
Query: 365 ELL 357
++
Sbjct: 1003 HVV 1005
>07_03_1424 -
26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = -3
Query: 458 QVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNL 327
+++ V + +MY + ++ R++E++H ++LLQ + T + +L
Sbjct: 797 EISLVKENAEKMYGHDEISVYRQNEILHSSEQLLQDELTHIKSL 840
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 28.3 bits (60), Expect = 8.1
Identities = 27/136 (19%), Positives = 64/136 (47%)
Frame = -3
Query: 545 KKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKD 366
KK + L +++E +++++ K IE ++ + + N ++T+ + ++ K
Sbjct: 737 KKGKGLVQEREGLKQVLDEKKSDIE----KLKHALDEKNAELENLKQTLDGNNSVLEKLK 792
Query: 365 ELLQVKDTQVSNLIAKMIDLSDRAVQYPADKRKHPVLCVTRDGTTFTAITGQKTYVESQK 186
+ +++ N I + +D+ + V DK KH + + +K E+ K
Sbjct: 793 QAWDELNSESEN-IKQALDVKNSEV----DKLKHALDENNSEIENLKHTLNEKNS-ETDK 846
Query: 185 HKRNIDAANIVVENIR 138
K++IDA + +EN++
Sbjct: 847 LKQDIDATYMEMENLK 862
>01_06_0117 +
26605186-26605443,26605540-26605583,26605659-26605737,
26605822-26605944,26606300-26606482,26606562-26606648,
26608149-26608255,26608387-26608474,26608805-26608885,
26608983-26609059,26609183-26609318,26609548-26609610,
26609983-26610563,26610816-26610933
Length = 674
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 272 RKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNP-TVDWNN 111
R +P + V R G TA+ + Y+ Q +R + ++E + PNP T +W N
Sbjct: 392 RINPSVDVIRWGLGSTAVRMAEDYIYGQHQRRRLAYFVELMEVLNPNPRTENWLN 446
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -3
Query: 545 KKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKD 366
K+ +E KK E + I +D++I +DL+ R + GF M+ KDE + + D
Sbjct: 865 KRLDEQKKKNEQPDLISLFEDQKIMKQDLEEIRKRLYMLESKEGFH--MEEKDEPIQEDD 922
Query: 365 ELL 357
++
Sbjct: 923 HVV 925
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,617,638
Number of Sequences: 37544
Number of extensions: 441709
Number of successful extensions: 1367
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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