Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e19
(841 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 33 0.33
L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical pr... 31 0.77
AL032636-4|CAA21606.1| 123|Caenorhabditis elegans Hypothetical ... 30 2.4
Z50176-1|CAA90538.2| 408|Caenorhabditis elegans Hypothetical pr... 29 3.1
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 29 3.1
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 29 3.1
U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical pr... 29 5.4
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 29 5.4
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 28 7.2
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr... 28 7.2
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 28 7.2
U40059-5|AAA81140.1| 191|Caenorhabditis elegans Hypothetical pr... 28 7.2
M37234-1|AAA28120.1| 272|Caenorhabditis elegans myosin I protein. 28 7.2
AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical ... 28 7.2
Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 28 9.5
AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical... 28 9.5
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 32.7 bits (71), Expect = 0.33
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = -3
Query: 536 EELFKKQEFIERIIAIK-DKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDE- 363
E L K+ IE DK+ + T T +N M + +ET++ + E K+DE
Sbjct: 71 ENLDNKENIIESTFKTAIDKEDTKSCSECTEFKTYMNNMKSVLEETLEEEKEKNKKRDEA 130
Query: 362 ---LLQVKDTQVSNLIAKMIDLSDRAVQYPADKRK 267
L K+ ++ +L ++I LS+ + K K
Sbjct: 131 SKKTLNSKNEEIEHLKKRVISLSNSQSENETMKSK 165
>L14433-2|AAA27978.1| 410|Caenorhabditis elegans Hypothetical
protein C50C3.8 protein.
Length = 410
Score = 31.5 bits (68), Expect = 0.77
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Frame = -3
Query: 587 HLPSTQTRCKRWWRKKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQ 408
H+ + + R + +FK +I + +I +D + V + MYTG
Sbjct: 224 HVGNKHIKAHRCILGQNSPVFKSMFSSPNMIEAQKGEIHIEDAKYDSVRAMVEFMYTGAT 283
Query: 407 ETMQRK---DEMMHKKD--ELLQVKDTQVSNLIAKMIDLSD 300
E+++ + DE++ D E+L +KD Q LIA+ I+L +
Sbjct: 284 ESLESQGNIDEILAIADKYEVLMLKD-QCERLIAQTINLKN 323
>AL032636-4|CAA21606.1| 123|Caenorhabditis elegans Hypothetical
protein Y40B1B.7 protein.
Length = 123
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = -3
Query: 563 CK--RWWRKKTEELFKKQEFIERIIAIKDKQIE--AKDLQVTRVMTDLNRMYTGFQETMQ 396
CK RWW+ K E+ + + ++ + + DK++E AK V RV ++ QE +
Sbjct: 14 CKSNRWWKTKQEKKHSEIKKVKTLKSTWDKKMELKAKKDMVKRVQDNIREKQV--QERQE 71
Query: 395 RKDEMMHKKDELLQ 354
+K+ + ++ L+
Sbjct: 72 KKERKVEQEKRRLE 85
>Z50176-1|CAA90538.2| 408|Caenorhabditis elegans Hypothetical
protein C09G1.1 protein.
Length = 408
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 363 LVFFVHHFIFSLHSFLK 413
L FFVHH +F+L S+LK
Sbjct: 20 LFFFVHHLLFNLFSYLK 36
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/93 (21%), Positives = 42/93 (45%)
Frame = -3
Query: 551 WRKKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHK 372
W+ + E K +E+IE+ + D +TR+ + +M ++ Q KD+ + +
Sbjct: 508 WKNRAE---KAEEYIEKENHRVQNASSSHDADITRLENEKTQMEEALEKADQEKDQAIRE 564
Query: 371 KDELLQVKDTQVSNLIAKMIDLSDRAVQYPADK 273
E ++V +++ SDR +Q +K
Sbjct: 565 ASESVRVMKREMTEASI----TSDRQIQSLKEK 593
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/93 (21%), Positives = 42/93 (45%)
Frame = -3
Query: 551 WRKKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHK 372
W+ + E K +E+IE+ + D +TR+ + +M ++ Q KD+ + +
Sbjct: 508 WKNRAE---KAEEYIEKENHRVQNASSSHDADITRLENEKTQMEEALEKADQEKDQAIRE 564
Query: 371 KDELLQVKDTQVSNLIAKMIDLSDRAVQYPADK 273
E ++V +++ SDR +Q +K
Sbjct: 565 ASESVRVMKREMTEASI----TSDRQIQSLKEK 593
>U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical
protein R02E12.4 protein.
Length = 639
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/91 (23%), Positives = 42/91 (46%)
Frame = -3
Query: 506 ERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNL 327
E +A++ K+++ D RV +L++ +TM++ E+ + + L+V + NL
Sbjct: 328 ESCLAVRRKKVQVGDHTSDRVDMELHKEKELMTDTMKQMKEIGERVERQLEVNQSARKNL 387
Query: 326 IAKMIDLSDRAVQYPADKRKHPVLCVTRDGT 234
L D ++ A H + + DGT
Sbjct: 388 ------LRDLTLKQEAISLDHKSVAIGADGT 412
>U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical
protein F10E7.8 protein.
Length = 929
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 224 AITGQKTYVESQKHKRNIDAANIVVENIRPNPTVDWNNATD 102
AI Q Y+ Q K N+D + + +R T DW A+D
Sbjct: 779 AIKMQSRYLGRQWRKSNMDIISAIYSRVRHRMTDDWAFASD 819
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = -3
Query: 467 KDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELL----QVKDTQVS-NLIAKMIDLS 303
K + R + L TG Q+T+ K + + ++K +V N IAK+ + S
Sbjct: 1090 KVVNYRRNASKLTGSMTGSQQTLHSKASSNEESSSNIVAGAEIKSAEVQMNYIAKLSNSS 1149
Query: 302 DRAVQYPADKRKHPVLCVTRDGTTFT 225
RAV Y + DG T T
Sbjct: 1150 QRAVSYALPTQYADKFSTFNDGCTLT 1175
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/81 (20%), Positives = 36/81 (44%)
Frame = -3
Query: 548 RKKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKK 369
R + L ++ E + R I ++I + Q+T+ ++ + Q KDE+ H
Sbjct: 1492 RSSMDNLSEQIETLRRENKIFSQEIRDINEQITQGGRTYQEVHKSVRRLEQEKDELQHAL 1551
Query: 368 DELLQVKDTQVSNLIAKMIDL 306
DE + + S ++ I++
Sbjct: 1552 DEAEAALEAEESKVLRLQIEV 1572
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/81 (20%), Positives = 36/81 (44%)
Frame = -3
Query: 548 RKKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKK 369
R + L ++ E + R I ++I + Q+T+ ++ + Q KDE+ H
Sbjct: 1492 RSSMDNLSEQIETLRRENKIFSQEIRDINEQITQGGRTYQEVHKSVRRLEQEKDELQHAL 1551
Query: 368 DELLQVKDTQVSNLIAKMIDL 306
DE + + S ++ I++
Sbjct: 1552 DEAEAALEAEESKVLRLQIEV 1572
>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical
protein C09G5.8 protein.
Length = 1531
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/76 (19%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = -3
Query: 551 WRKKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTD-LNRMYTGFQETMQRKDEMMH 375
W+K EL+++ E + ++ I+ I K ++ +++ D L+R+ T E + + E +
Sbjct: 646 WQKLYSELYEELEKVRNMLLIQ-YDINQKQMKEIKLLKDELDRLKTVSAEILSKSREEVE 704
Query: 374 KKDELLQVKDTQVSNL 327
++ + + + + Q+ +
Sbjct: 705 ERQKKIFMLEEQIRTI 720
>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical
protein C09G5.8 protein.
Length = 1531
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/76 (19%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = -3
Query: 551 WRKKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTD-LNRMYTGFQETMQRKDEMMH 375
W+K EL+++ E + ++ I+ I K ++ +++ D L+R+ T E + + E +
Sbjct: 646 WQKLYSELYEELEKVRNMLLIQ-YDINQKQMKEIKLLKDELDRLKTVSAEILSKSREEVE 704
Query: 374 KKDELLQVKDTQVSNL 327
++ + + + + Q+ +
Sbjct: 705 ERQKKIFMLEEQIRTI 720
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/81 (20%), Positives = 36/81 (44%)
Frame = -3
Query: 548 RKKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKK 369
R + L ++ E + R I ++I + Q+T+ ++ + Q KDE+ H
Sbjct: 1492 RSSMDNLSEQIETLRRENKIFSQEIRDINEQITQGGRTYQEVHKSVRRLEQEKDELQHAL 1551
Query: 368 DELLQVKDTQVSNLIAKMIDL 306
DE + + S ++ I++
Sbjct: 1552 DEAEAALEAEESKVLRLQIEV 1572
>U40059-5|AAA81140.1| 191|Caenorhabditis elegans Hypothetical
protein K03C7.3 protein.
Length = 191
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +2
Query: 476 SACP*LR*CVR*TLAF*KVPRFFCATTACSAFVCSVNVAISLVTNCLFFSSCCLIAGSYL 655
S CP +R + K F C T S F C+ + L FS+CC I G +
Sbjct: 2 STCPRMRGLQKRLSDGKKDASFECVTLLKSVF-CARKKKKRFFLSFLSFSTCCSILGWFF 60
Query: 656 PVHST 670
HST
Sbjct: 61 LSHST 65
>M37234-1|AAA28120.1| 272|Caenorhabditis elegans myosin I protein.
Length = 272
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/81 (20%), Positives = 36/81 (44%)
Frame = -3
Query: 548 RKKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKK 369
R + L ++ E + R I ++I + Q+T+ ++ + Q KDE+ H
Sbjct: 1 RSSMDNLSEQIETLRRENKIFSQEIRDINEQITQGGRTYQEVHKSVRRLEQEKDELQHAL 60
Query: 368 DELLQVKDTQVSNLIAKMIDL 306
DE + + S ++ I++
Sbjct: 61 DEAEAALEAEESKVLRLQIEV 81
>AL032643-5|CAA21656.1| 622|Caenorhabditis elegans Hypothetical
protein Y54E5A.7 protein.
Length = 622
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Frame = -3
Query: 545 KKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQ-RK-DEMMHK 372
K TEEL+ K IER +D + E + + T +M+ +++ Q RK + ++
Sbjct: 400 KATEELYLKDAKIERFYIDQDTEEEMLHIDGVSMPT---KMFVELEKSGQYRKLNYILKM 456
Query: 371 KDELLQVKDTQVSNL---IAKMIDLSDRAVQYPADKRKHPV 258
E+++V N+ K+++++ V P KHP+
Sbjct: 457 GREIMKVAGEMRGNIAPEARKVVEIATSMVSSPERPAKHPL 497
>Z81586-5|CAB04696.1| 484|Caenorhabditis elegans Hypothetical
protein T05F1.7 protein.
Length = 484
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = -3
Query: 566 RCKRWWRKKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKD 387
R + + K E+ KK + +++ ++DK+I + R +++ + +QR+
Sbjct: 122 RTENSMKSKMEKAKKKLDEMKKKKIVQDKKISRLRSDIARSEKSFDKVEKDIHKEIQRQM 181
Query: 386 EMMHKKDEL-LQVKDTQVSN 330
E KK+E+ ++K +V N
Sbjct: 182 ENETKKEEIERRIKIFEVEN 201
>Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical
protein F27D4.4a protein.
Length = 374
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -3
Query: 545 KKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKD 366
KK+E+ K++ ++ +K+K+ V +V + T Q++ +KD
Sbjct: 10 KKSEQKRKEKVIEDKTFGLKNKKGNKNQKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKD 69
Query: 365 ELLQVKD--TQVSNLIAKMID 309
ELL + + V +AK +D
Sbjct: 70 ELLDIANLLKPVEQKVAKDVD 90
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
protein T28C6.9 protein.
Length = 1861
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = -3
Query: 563 CKRWWRKKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDE 384
C K+ +E + E + + +E Q + +L+ + GF ET + DE
Sbjct: 160 CNEELEKRVDEYEEAAEEKDEDLKQSTWDVETLTRQNEALRVELDGVRQGFHETRELADE 219
Query: 383 MMHKKDEL 360
+ H + EL
Sbjct: 220 VKHLRSEL 227
>AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical
protein K04F10.7 protein.
Length = 293
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -3
Query: 410 QETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDR 297
++ ++R ++ +KD+L+ KD Q+SNL A +L +
Sbjct: 225 EDEIRRLKTLLAEKDQLIFDKDKQISNLKADQYNLDKK 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,429,420
Number of Sequences: 27780
Number of extensions: 389597
Number of successful extensions: 1497
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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