Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e18
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 32 0.075
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 31 0.13
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces... 28 1.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.2
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.1
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 27 2.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.8
SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 4.9
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 26 6.5
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 6.5
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 25 8.6
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 25 8.6
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 8.6
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 25 8.6
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 32.3 bits (70), Expect = 0.075
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Frame = -2
Query: 269 KNSQVEHKMTMLNCDYAMLKHEHKI---TELKLKWANRDLEEFTKKTQELQSTVNDLQEQ 99
K++ ++ K LN +K + K+ T+ L+ RD+ KK + +S +N+L+ +
Sbjct: 481 KSALIDKKDQELNNLREQIKEQKKVSESTQSSLQSLQRDILNEKKKHEVYESQLNELKGE 540
Query: 98 LRKQVAESQAKFSQFERRNSELVAELYT 15
L+ +++ S+ SQ +E A + T
Sbjct: 541 LQTEISNSEHLSSQLSTLAAEKEAAVAT 568
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -2
Query: 188 LKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRN 42
LKL+ +N+ L + + L+ + L+E LRK +E +FS+ E +N
Sbjct: 668 LKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRK--SEEALRFSKLEAKN 714
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 31.5 bits (68), Expect = 0.13
Identities = 23/111 (20%), Positives = 53/111 (47%)
Frame = -2
Query: 353 LENNTVNNRIIDLNDVXXXXXXXXXXRAKNSQVEHKMTMLNCDYAMLKHEHKITELKLKW 174
L ++T N++ + D + +NS+ E + ++ + ++ E+ +T +
Sbjct: 816 LLSSTQNDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLLTTERA-- 873
Query: 173 ANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVAEL 21
D EE ++TQE + + D + ++Q Q + + ++ N+EL +EL
Sbjct: 874 IALDKEEILRRTQERLANIEDSFSETKQQNENLQRESASLKQINNELESEL 924
>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 108
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = -2
Query: 179 KWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVAE 24
++A++ EEF K + + + + +KQV ++ A ++NS+ V +
Sbjct: 47 EYASKKEEEFKKSESQASGIYSQAEAESKKQVQDTFASIETSSQKNSDKVVD 98
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 1.2
Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 2/121 (1%)
Frame = -2
Query: 389 NRDSIKQ--HWRELLENNTVNNRIIDLNDVXXXXXXXXXXRAKNSQVEHKMTMLNCDYAM 216
N + I+Q + R L+ + N + L + + Q+E L
Sbjct: 656 NTNLIEQTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQL--TS 713
Query: 215 LKHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSE 36
L E + KL + L + EL + LQEQL + E Q SQ NS+
Sbjct: 714 LTSERSLALEKLNDLEKSLVLSERSKDELDESYKSLQEQLASKKIEVQNVSSQLSICNSQ 773
Query: 35 L 33
L
Sbjct: 774 L 774
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 215 LKHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRK 90
L+HE +I + K + D ++ + LQSTV+ LQ +L +
Sbjct: 1206 LRHEKEIMDNKYELTILDNRGLNQQVKSLQSTVDSLQLELNR 1247
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = -2
Query: 182 LKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVAE 24
LK +DLE K +E + ++N+ +L + +F +FE R + +
Sbjct: 233 LKKREKDLENRLLKVEEHEKSLNERATKLSEANENFNNRFKEFEEREKSAIKQ 285
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -2
Query: 224 YAMLKHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAK 66
Y++ K + + +L +R E + +ELQ +N+L++ RK +SQAK
Sbjct: 61 YSLGKRISQPSYARLVGPSRPTLENLQDRRELQEQLNELRKLSRKSAFKSQAK 113
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.1 bits (57), Expect = 2.8
Identities = 24/120 (20%), Positives = 44/120 (36%)
Frame = -2
Query: 392 RNRDSIKQHWRELLENNTVNNRIIDLNDVXXXXXXXXXXRAKNSQVEHKMTMLNCDYAML 213
+N DS+ Q EL N +++ R +EH+ M + L
Sbjct: 51 KNMDSVVQKLNELQNNVVAFQKLLQEKTPLSSIQDLEGFREFMENLEHRYEMTVSEVRRL 110
Query: 212 KHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSEL 33
HE + + E+ +K S N L Q + ++ +S + S+ E + + L
Sbjct: 111 SHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINSL 170
>SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 116
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 170 NRDLEEFTKKTQELQSTVNDLQEQLRKQVAE 78
N LE+F K ++E TV + LR+Q E
Sbjct: 48 NNSLEDFRKYSKEFLETVEFISTGLRRQALE 78
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 191 ELKLKWANRDLEEFTKKTQELQSTVNDLQEQL---RKQVAESQAKFSQFERRNSELVAEL 21
E + +W ++ K +EL STVN +EQL + +++ S+ ER + L L
Sbjct: 1608 EEETEWLQEEVN--IMKIKELTSTVNKYREQLAMVQSLNEHAESSLSKAERSKNYLTGRL 1665
Query: 20 YTIE 9
+E
Sbjct: 1666 QEVE 1669
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 6.5
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -2
Query: 203 HKITELKLKWANRDLEEFTKKTQ-ELQSTVNDLQEQLRKQVAESQAKFSQFERRNSEL 33
HKI E L R L E T+K Q EL ++DL+E L S+ + + R + ++
Sbjct: 121 HKILE-NLDEQTRKLSERTEKQQDELDIALDDLEETLNTLKRTSENRDREIARISQDV 177
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 252 FNLAVLGSQLGPFSFQSLHIV*VYNAIVD 338
F LA +G FSFQ++H+ YN + +
Sbjct: 44 FELATNRKVVGKFSFQNVHLENEYNILTE 72
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 197 ITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLR 93
+ E L+W D + + +E +ST +D+QE L+
Sbjct: 230 LLETCLEWLKEDKKNRGTREEEKRSTWDDVQESLK 264
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 8.6
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = -2
Query: 221 AMLKHEHKI--TELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAES-QAKFSQFE 51
A+ K+E K+ T +LK + + E K+ E Q+T +LQ K++ E + + SQFE
Sbjct: 54 ALSKNELKLNNTIKQLKKSLSEAETKLKRLDEKQATP-ELQVSDSKEMEEQLELQKSQFE 112
Query: 50 RRNSELVAE 24
+R S L E
Sbjct: 113 KRISILEKE 121
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 8.6
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = -2
Query: 272 AKNSQVEHKMTMLNCDYAMLKHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQ-- 99
A S V+ K++ + Y + K L ++ E+ ++ L++T+N LQ+Q
Sbjct: 531 ANLSDVKAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNK 590
Query: 98 -----LRKQVAESQAKFSQFERRNSEL 33
L + VAES+A + E N+ +
Sbjct: 591 QKGEVLEQVVAESEAAKNMVESSNASI 617
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 245 FYVQLGCSWLAARTVLFPIAPHR 313
+ + GCSW AA +L + P+R
Sbjct: 15 YALAFGCSWYAAHKLLSTLDPYR 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,622
Number of Sequences: 5004
Number of extensions: 46724
Number of successful extensions: 192
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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