Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e18
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical ... 35 0.053
AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical ... 33 0.28
AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ... 31 1.1
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z34801-3|CAA84327.1| 520|Caenorhabditis elegans Hypothetical pr... 30 2.0
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 29 2.6
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 29 2.6
AL023828-24|CAD56604.1| 196|Caenorhabditis elegans Hypothetical... 29 2.6
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 29 2.6
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 29 3.5
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 29 3.5
U29380-18|ABB88224.1| 733|Caenorhabditis elegans Zygote defecti... 29 3.5
AY487140-1|AAR32790.1| 733|Caenorhabditis elegans centrosome at... 29 3.5
AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical ... 29 3.5
Z99278-7|CAB16488.1| 382|Caenorhabditis elegans Hypothetical pr... 29 4.6
AL132948-9|CAC51067.1| 256|Caenorhabditis elegans Hypothetical ... 28 6.1
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 28 6.1
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 28 6.1
AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical ... 28 6.1
AC024850-1|AAF60860.2| 404|Caenorhabditis elegans Groundhog (he... 28 6.1
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 28 8.0
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -2
Query: 605 CNICFTTLKDTKNVDSSFVT-SIDCNHAVCFKCYVRIIMDNSTYKC-FC 465
C ICF DT DS + ++ C HA+C KC + +++NST +C FC
Sbjct: 6 CKICFDRFSDT---DSEHIPRNLTCGHALCHKC-ITAMVNNSTVECPFC 50
>AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical
protein Y6D1A.2 protein.
Length = 272
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -2
Query: 605 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC 471
C IC +DTK +DC H +C +C RI +KC
Sbjct: 183 CEICSREYEDTKE---RVPRVLDCGHTICHECITRIHKPTEPFKC 224
>AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical
protein ZK1240.3 protein.
Length = 304
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -2
Query: 605 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKCFCSASSS--DFRVY 435
C IC K+ N+D + I C H++C C ++I ++ Y FC ++ D +V
Sbjct: 6 CEIC---CKEYSNIDQNHSPKILKCGHSICQICAAKLITNSCIYCPFCRETTKIRDGKVE 62
Query: 434 NKHGYVEFMPLTLIRNRDSIKQ 369
N M I + KQ
Sbjct: 63 NLKKNFGLMKAIEIMKNSTTKQ 84
>AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical
protein Y43F4B.6 protein.
Length = 1083
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = -2
Query: 185 KLKWANRDLEEFTKKTQ-ELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVAEL 21
KL+ R +EE KKT+ EL++ LR+Q AE+ +KF F++++ +A++
Sbjct: 586 KLQETRRRMEETLKKTEDELKNLKTQRLRLLREQRAEA-SKFQAFKQKHEREMAQM 640
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -2
Query: 200 KITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFER 48
K T ++K N+ L++ ++ ++ QS V + +LRK +AE+ K +F+R
Sbjct: 541 KKTIQEVKADNKKLQQILEEVRQNQSKVLEENVKLRKGMAEAIEKIEEFKR 591
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = -2
Query: 230 CDYAMLKHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFE 51
CD + +H+ I ++K K +L E +E++S + E+ KQ+ + Q K +
Sbjct: 950 CDENISRHDKDIEKMKKKC--EELMEKAIDDEEVKSK-KETVERFEKQIKKLQTKGEEMT 1006
Query: 50 RRNSELVA 27
++ SEL A
Sbjct: 1007 KKQSELSA 1014
>Z34801-3|CAA84327.1| 520|Caenorhabditis elegans Hypothetical
protein F59A2.2 protein.
Length = 520
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = -2
Query: 200 KITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFE 51
K++E K + LEE +K E+++ +ND E+L+++ + + + S ++
Sbjct: 368 KLSEAKAQGVKAVLEEEERKRTEMETDLNDEIERLKEETEKMRLEMSTYK 417
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 158 EEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVAE 24
++ + + L+ TV+DL+ ++KQ +E QAK Q E+ ++
Sbjct: 951 KKIEQDNEGLKKTVSDLETTIKKQESEKQAKDHQIRSLQDEIQSQ 995
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Frame = -2
Query: 161 LEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFE---RRNSELVAELYTIEMS 3
LEE K+ E S++NDL+E+L AES+ K ++++ + +++LV L T++++
Sbjct: 436 LEEKNKEISERDSSINDLKEKL----AESEKKATKYKNELKEHADLVENL-TLQLN 486
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Frame = -2
Query: 161 LEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFE---RRNSELVAELYTIEMS 3
LEE K+ E S++NDL+E+L AES+ K ++++ + +++LV L T++++
Sbjct: 438 LEEKNKEISERDSSINDLKEKL----AESEKKATKYKNELKEHADLVENL-TLQLN 488
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Frame = -2
Query: 161 LEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFE---RRNSELVAELYTIEMS 3
LEE K+ E S++NDL+E+L AES+ K ++++ + +++LV L T++++
Sbjct: 438 LEEKNKEISERDSSINDLKEKL----AESEKKATKYKNELKEHADLVENL-TLQLN 488
>AL023828-24|CAD56604.1| 196|Caenorhabditis elegans Hypothetical
protein Y17G7B.21 protein.
Length = 196
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = -2
Query: 200 KITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVA 27
K+ + K+A R + +L+ + ++ ++++AES+A+ +F+R EL+A
Sbjct: 72 KLFNVGKKYAKRFATSTSSAASKLRLVKLKIDKKYQQRLAESKARVERFQREREELLA 129
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = -2
Query: 272 AKNSQVEHKMTMLNCDYAMLKHEHKITELKLKWANRDLEEFTKKTQELQSTV---NDLQE 102
+++ + EH++ M K E ++ LK + AN +++EF K ++L+ V ++ +E
Sbjct: 397 SESLKYEHELVRKMMIEDMEKLEAEVLALKSQQANLEIQEFHDKIKQLELEVQLSSENKE 456
Query: 101 QLRKQVAESQAKFSQFERRNSELV 30
+L+ ++ Q K S+ + E V
Sbjct: 457 KLQAELMVVQEKASENIKNAEEKV 480
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 191 ELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSEL 33
E KLK + L ++ K +ELQS +N +++L + AE++ + EL
Sbjct: 278 EKKLKTSQEKLVKYEGKIEELQSRLNKKRKELEEVQAENRKLLEDKNTHDFEL 330
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 191 ELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSEL 33
E KLK + L ++ K +ELQS +N +++L + AE++ + EL
Sbjct: 278 EKKLKTSQEKLVKYEGKIEELQSRLNKKRKELEEVQAENRKLLEDKNTHDFEL 330
>U29380-18|ABB88224.1| 733|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform d protein.
Length = 733
Score = 29.1 bits (62), Expect = 3.5
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Frame = -2
Query: 434 NKHGYVEFMPLTLIRNRDSIKQ---HWRELLEN-NTVNNRIIDLNDVXXXXXXXXXXRAK 267
+K VE + + LI++++ +K+ EL+E N + N++I V A
Sbjct: 434 SKKRCVEQLEIQLIQHKEKVKELEDRKDELIEERNRLENQLIFKEAVTPRSLHESMFEAG 493
Query: 266 NSQVEHKMTM-LNCDYAMLKHEHKITE---------LKLKWANRDLEE----FTKKTQEL 129
N + K T+ L + L + E + LK N LEE TK+ +EL
Sbjct: 494 NLSFDEKNTLPLEIENKRLTERIQELESLEPLKGELITLKSKNGVLEEEKLFATKQIEEL 553
Query: 128 QSTVNDLQEQLRK 90
Q + DLQE L K
Sbjct: 554 QQQIEDLQENLLK 566
>AY487140-1|AAR32790.1| 733|Caenorhabditis elegans centrosome
attachment protein A protein.
Length = 733
Score = 29.1 bits (62), Expect = 3.5
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Frame = -2
Query: 434 NKHGYVEFMPLTLIRNRDSIKQ---HWRELLEN-NTVNNRIIDLNDVXXXXXXXXXXRAK 267
+K VE + + LI++++ +K+ EL+E N + N++I V A
Sbjct: 434 SKKRCVEQLEIQLIQHKEKVKELEDRKDELIEERNRLENQLIFKEAVTPRSLHESMFEAG 493
Query: 266 NSQVEHKMTM-LNCDYAMLKHEHKITE---------LKLKWANRDLEE----FTKKTQEL 129
N + K T+ L + L + E + LK N LEE TK+ +EL
Sbjct: 494 NLSFDEKNTLPLEIENKRLTERIQELESLEPLKGELITLKSKNGVLEEEKLFATKQIEEL 553
Query: 128 QSTVNDLQEQLRK 90
Q + DLQE L K
Sbjct: 554 QQQIEDLQENLLK 566
>AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical
protein ZK1240.8 protein.
Length = 292
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 605 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKC 471
C +C +D N+D S + C H++C C V++I NS C
Sbjct: 6 CEVCN---EDYSNLDESRAPRVLKCGHSICQNCAVKLI-SNSVILC 47
>Z99278-7|CAB16488.1| 382|Caenorhabditis elegans Hypothetical
protein Y53C12B.6 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -2
Query: 533 NHAVCFKCYVRIIMDNSTYKC---FCSASSSDFRVYNKHGYVEFMPLTLIRNR 384
NH V FKC +RI + N + +C CS + S + K V P L++ +
Sbjct: 258 NHIVYFKCNIRITVKNPSGECPVNNCSPNGSTGLISRKARDVFEHPFLLLKQK 310
>AL132948-9|CAC51067.1| 256|Caenorhabditis elegans Hypothetical
protein Y39B6A.10 protein.
Length = 256
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = -2
Query: 584 LKDTKNVDSSFVTSIDCNHAVCFKCYVRIIM-DNSTYKCFCSASSSDFRVYNKHGYVEFM 408
LK T+N++ S + + A+C K V + + D + ++ F S R+ K
Sbjct: 115 LKITENLEKSIIDYL----ALCQKLPVLVTLRDVTEFQIFAQKSEVPLRIQYKK-----R 165
Query: 407 PLTLIRNRDSIKQHWRELLENNTVNNRII 321
L ++R +++KQ + ++L N+T +I
Sbjct: 166 KLKILRISENLKQFFTKMLGNSTSGTHLI 194
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = -2
Query: 191 ELKLKWANRDLEEFTKKTQELQSTVNDLQEQLR---KQVAESQAKFSQFERRNSELVAEL 21
E KLK A DL+E ++ +E+ + +L ++L K + +S K ++ ++ ++L E
Sbjct: 821 EHKLKNAESDLQEAKRRAEEIGAEKKELSDRLNEMLKNLNQSMQKSAENDKMLTQLREEA 880
Query: 20 YTIE 9
+ E
Sbjct: 881 FAKE 884
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 164 DLEEFTKKTQELQSTVNDLQEQLRKQ--VAESQAKFSQFERRNSELVAELYTIE 9
+LEE K ELQ V L+E+L K+ VA S + ++E+V + IE
Sbjct: 709 ELEELRNKNLELQEQVKQLKEELEKEKSVAGSGNSGGWSDIDDNEVVEAVQPIE 762
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = -2
Query: 191 ELKLKWANRDLEEFTKKTQELQSTVNDLQEQLR---KQVAESQAKFSQFERRNSELVAEL 21
E KLK A DL+E ++ +E+ + +L ++L K + +S K ++ ++ ++L E
Sbjct: 833 EHKLKNAESDLQEAKRRAEEIGAEKKELSDRLNEMLKNLNQSMQKSAENDKMLTQLREEA 892
Query: 20 YTIE 9
+ E
Sbjct: 893 FAKE 896
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 164 DLEEFTKKTQELQSTVNDLQEQLRKQ--VAESQAKFSQFERRNSELVAELYTIE 9
+LEE K ELQ V L+E+L K+ VA S + ++E+V + IE
Sbjct: 721 ELEELRNKNLELQEQVKQLKEELEKEKSVAGSGNSGGWSDIDDNEVVEAVQPIE 774
>AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical
protein F42G2.5 protein.
Length = 374
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 605 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC-FC 465
C IC TL+ + VD+ + C H++C C + + N C FC
Sbjct: 134 CEIC--TLEFSSVVDNQIPRILQCGHSICQSCASK-LAKNCVILCPFC 178
>AC024850-1|AAF60860.2| 404|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 16 protein.
Length = 404
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 119 VNDLQEQLRKQVAESQAKFSQFERRNSELVAE 24
VN+ + QL KQ+ E Q KF + E+ + V E
Sbjct: 130 VNEYELQLAKQIEEDQLKFVEDEKNPMKYVVE 161
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -2
Query: 608 SCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRII 495
SC IC+ K + F C H +C +C +++
Sbjct: 115 SCGICYDPFNTGKRIPKVF----PCGHTICLQCIKKLL 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,012
Number of Sequences: 27780
Number of extensions: 272050
Number of successful extensions: 1129
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -