Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e16
(864 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin... 310 4e-83
UniRef50_Q03209 Cluster: 61 kDa protein; n=6; Nucleopolyhedrovir... 196 6e-49
UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protei... 190 4e-47
UniRef50_Q91GB9 Cluster: ORF1629; n=2; Epiphyas postvittana NPV|... 58 2e-07
UniRef50_Q2NNS2 Cluster: 1629capsid; n=1; Hyphantria cunea nucle... 58 4e-07
UniRef50_Q1HH95 Cluster: 1629-capsid; n=2; Antheraea pernyi nucl... 46 0.001
UniRef50_Q06KR7 Cluster: Viral capsid associated protein; n=3; N... 44 0.007
UniRef50_Q7TLL9 Cluster: Capsid associated protein; n=1; Chorist... 39 0.19
UniRef50_UPI000018F67A Cluster: hypothetical protein Rm378p122; ... 36 1.3
UniRef50_Q97EM6 Cluster: TPR-repeat-containing protein; n=1; Clo... 36 1.7
UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5; ... 34 4.0
UniRef50_Q241V2 Cluster: TPR Domain containing protein; n=2; Tet... 33 7.1
UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2; ... 33 7.1
UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1; ... 33 7.1
>UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin -
Spodoptera littoralis nuclear polyhedrosis virus (SlNPV)
Length = 249
Score = 310 bits (760), Expect = 4e-83
Identities = 137/177 (77%), Positives = 156/177 (88%)
Frame = -2
Query: 863 LTXFKEIRSXKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTR 684
LT FKEIR+ KPDTMKLIVNW+GKEFLRETWTRF+EDSFPIVNDQEVMDV+LV N++PTR
Sbjct: 73 LTLFKEIRNVKPDTMKLIVNWNGKEFLRETWTRFMEDSFPIVNDQEVMDVFLVVNMRPTR 132
Query: 683 PNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYT 504
PNRC++FLAQHALR + +YVPH+VIRIVEPSYVG NNEYRISLAKKGGGCP+MN+H+EYT
Sbjct: 133 PNRCFRFLAQHALRCDPEYVPHDVIRIVEPSYVGTNNEYRISLAKKGGGCPVMNLHAEYT 192
Query: 503 NSFESFVNRVIWENFYKPIVYIGTDXXXXXXXXXXXXXVFKIKEFAPDAPLFTGPAY 333
SFESF+++VIW NFYKPIVY+GTD VFKIKEFAPDAPL+TGPAY
Sbjct: 193 TSFESFIDKVIWYNFYKPIVYVGTDSAEEEEILLEVSLVFKIKEFAPDAPLYTGPAY 249
>UniRef50_Q03209 Cluster: 61 kDa protein; n=6;
Nucleopolyhedrovirus|Rep: 61 kDa protein - Autographa
californica nuclear polyhedrosis virus (AcMNPV)
Length = 543
Score = 196 bits (478), Expect = 6e-49
Identities = 94/99 (94%), Positives = 96/99 (96%)
Frame = +1
Query: 1 QTNIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFKFRYKD 180
QTNIDKARLLLQDLAS V LSENPLDSPAIG +KQPLFETNRNLFYKSIEDLIFKFRYKD
Sbjct: 445 QTNIDKARLLLQDLASFVALSENPLDSPAIGSEKQPLFETNRNLFYKSIEDLIFKFRYKD 504
Query: 181 AENHLIFALTYHPKDYKFNELLKYVQQLSVNQQRTESNA 297
AENHLIFALTYHPKDYKFNELLKYVQQLSVNQQRTES+A
Sbjct: 505 AENHLIFALTYHPKDYKFNELLKYVQQLSVNQQRTESSA 543
>UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protein;
n=4; Nucleopolyhedrovirus|Rep: Polyhedrin, major
occlusion body protein - Neodiprion lecontii NPV
Length = 247
Score = 190 bits (463), Expect = 4e-47
Identities = 85/176 (48%), Positives = 116/176 (65%), Gaps = 1/176 (0%)
Frame = -2
Query: 863 LTXFKEIRSXKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTR 684
+ F+E+R+ K +TMKL +NWSG+E+LRE WT F+ED+FPI N QE DV+L P +
Sbjct: 71 MVMFQEVRNIKANTMKLAINWSGREYLREVWTTFIEDTFPINNYQEFTDVFLEIRCTPNK 130
Query: 683 PNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYT 504
NR Y+FLAQH LR +ED+VP + IR++EP Y+ N +SL K+ GGCP+M I ++
Sbjct: 131 SNRHYRFLAQHGLRMDEDFVPCDTIRVIEPEYL-QGNTVSLSLLKRDGGCPMMKIRQQFN 189
Query: 503 N-SFESFVNRVIWENFYKPIVYIGTDXXXXXXXXXXXXXVFKIKEFAPDAPLFTGP 339
E FV+R++W +F++PIVYIGTD F IKEFAP+AP GP
Sbjct: 190 ELDLEQFVDRILWCHFHRPIVYIGTDSGEEEEVFIEASLTFIIKEFAPEAPFVNGP 245
>UniRef50_Q91GB9 Cluster: ORF1629; n=2; Epiphyas postvittana
NPV|Rep: ORF1629 - Epiphyas postvittana
nucleopolyhedrovirus (EppoMNPV)
Length = 562
Score = 58.4 bits (135), Expect = 2e-07
Identities = 32/86 (37%), Positives = 48/86 (55%)
Frame = +1
Query: 7 NIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFKFRYKDAE 186
N+++A+ +L +L RV L+ N LD+ + Q L+ + N FY +EDLIF RY DA+
Sbjct: 476 NVNEAKNILDNLKERVKLTSNQLDNA----EAQSLYINDPNQFYIQVEDLIFAGRYADAK 531
Query: 187 NHLIFALTYHPKDYKFNELLKYVQQL 264
HL A+T D + L K+ L
Sbjct: 532 MHLDLAITESGNDERLRRLKKFANDL 557
>UniRef50_Q2NNS2 Cluster: 1629capsid; n=1; Hyphantria cunea
nucleopolyhedrovirus|Rep: 1629capsid - Hyphantria cunea
nuclear polyhedrosis virus (HcNPV)
Length = 539
Score = 57.6 bits (133), Expect = 4e-07
Identities = 38/97 (39%), Positives = 49/97 (50%)
Frame = +1
Query: 7 NIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFKFRYKDAE 186
N++KA + L RVV+ N LDS Q L+ + FY +IEDLI +Y++A
Sbjct: 449 NVEKANVKLNSFRERVVMPANALDSQ----QAPALYAKDAAQFYVAIEDLILAGKYEEAR 504
Query: 187 NHLIFALTYHPKDYKFNELLKYVQQLSVNQQRTESNA 297
HL L P D K +EL Y QLS NQ S A
Sbjct: 505 AHL--KLVNAPFDAKVSELSTYANQLSANQLLASSVA 539
>UniRef50_Q1HH95 Cluster: 1629-capsid; n=2; Antheraea pernyi
nucleopolyhedrovirus|Rep: 1629-capsid - Antheraea pernyi
nuclear polyhedrosis virus (ApNPV)
Length = 591
Score = 46.4 bits (105), Expect = 0.001
Identities = 32/89 (35%), Positives = 42/89 (47%)
Frame = +1
Query: 7 NIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFKFRYKDAE 186
N++KA+ L+ + V L+EN LDS + L+ N FY IEDLIF RY D
Sbjct: 509 NVEKAKNDLRLFSKSVQLTENALDSQS----PVELYAANAPQFYVQIEDLIFAGRYDDV- 563
Query: 187 NHLIFALTYHPKDYKFNELLKYVQQLSVN 273
P D K LL+ +LS N
Sbjct: 564 -RAFVQAVDAPDDLKLKNLLRVANELSAN 591
>UniRef50_Q06KR7 Cluster: Viral capsid associated protein; n=3;
Nucleopolyhedrovirus|Rep: Viral capsid associated
protein - Anticarsia gemmatalis nuclear polyhedrosis
virus (AgMNPV)
Length = 643
Score = 43.6 bits (98), Expect = 0.007
Identities = 34/90 (37%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +1
Query: 7 NIDKARLLLQDLASRVVLSENPLDSPAIGLQKQP---LFETNRNLFYKSIEDLIFKFRYK 177
N++KA+ L VVL EN LD KQP L+ + + FY IEDLIF RY
Sbjct: 561 NVEKAKNSLHLFRKNVVLPENELD-------KQPPLELYAADASKFYLQIEDLIFAGRYD 613
Query: 178 DAENHLIFALTYHPKDYKFNELLKYVQQLS 267
DA P D K LL LS
Sbjct: 614 DA--RAFIQAVNAPDDVKLKNLLAITNDLS 641
>UniRef50_Q7TLL9 Cluster: Capsid associated protein; n=1;
Choristoneura fumiferana MNPV|Rep: Capsid associated
protein - Choristoneura fumiferana nuclear polyhedrosis
virus (CfMNPV)
Length = 631
Score = 38.7 bits (86), Expect = 0.19
Identities = 27/87 (31%), Positives = 43/87 (49%)
Frame = +1
Query: 7 NIDKARLLLQDLASRVVLSENPLDSPAIGLQKQPLFETNRNLFYKSIEDLIFKFRYKDAE 186
N++KA++ L RV ++EN ++ Q L+ + F+ IE+L+ +Y +A
Sbjct: 549 NVNKAKVSLDTFKKRVTVAENLPNAE----QMLALYAADAPQFFTQIENLLLADKYVEAN 604
Query: 187 NHLIFALTYHPKDYKFNELLKYVQQLS 267
+L P D K NELL QLS
Sbjct: 605 AYL--RAVDAPDDQKVNELLTRADQLS 629
>UniRef50_UPI000018F67A Cluster: hypothetical protein Rm378p122;
n=1; Rhodothermus phage RM378|Rep: hypothetical protein
Rm378p122 - Bacteriophage RM 378
Length = 225
Score = 35.9 bits (79), Expect = 1.3
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 139 KSIEDLIFKFRYKDAENHLIFALTYHPKDYKFNELLKYVQQL 264
K + DL+ K YK+A L+FA +P+ ++ LKY+++L
Sbjct: 168 KLVRDLLKKVSYKEAVGMLVFAANVNPEHNIYDRALKYIKEL 209
>UniRef50_Q97EM6 Cluster: TPR-repeat-containing protein; n=1;
Clostridium acetobutylicum|Rep: TPR-repeat-containing
protein - Clostridium acetobutylicum
Length = 412
Score = 35.5 bits (78), Expect = 1.7
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +1
Query: 133 FYKSIEDLIFKFRYKDAENHLIFALTYHPKDYKFNELLKYVQQLSVNQQRTES 291
FYK+ DLI Y+ A+++L+ A Y K+Y +++++ ++ + N ES
Sbjct: 296 FYKAGTDLIKNKNYEGAKDNLLKAYKYGEKNYLYSDIIYFIAETYKNTNDAES 348
>UniRef50_A2FHI5 Cluster: Putative uncharacterized protein; n=5;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 468
Score = 34.3 bits (75), Expect = 4.0
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 797 GKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKP--TRPNRCYKFLAQHALRWEEDY 627
G EFL +T FV+ ++ +N++ D+Y A ++ + C F A ++E+Y
Sbjct: 103 GIEFLTNIFTEFVKSTYKEINEENFYDIYDCATIQNDINKVEECISFFASKMNDFQEEY 161
>UniRef50_Q241V2 Cluster: TPR Domain containing protein; n=2;
Tetrahymena thermophila SB210|Rep: TPR Domain containing
protein - Tetrahymena thermophila SB210
Length = 446
Score = 33.5 bits (73), Expect = 7.1
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 82 PAIGLQKQPLFETNRNLFYKSIEDLIFKFR-YKDAENHLIFALTYHPKDYKFNELLKYVQ 258
PA+ K+ L T Y +I ++ F+ + ++AE++ + AL P D +FNE L V
Sbjct: 328 PALKYYKKSLNSTCYVDIYNNIGNVYFQLKDLEEAEHYFLKALQQDPNDLQFNENLNIVA 387
Query: 259 QLS 267
+ S
Sbjct: 388 EYS 390
>UniRef50_O17562 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 623
Score = 33.5 bits (73), Expect = 7.1
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -3
Query: 811 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 632
SST + S + + T++P T K T TS+PTS + T A ++ +
Sbjct: 162 SSTASVSSTILSSTATTMVTSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPT 220
Query: 631 TT-CPTK*SELWSHPT 587
TT CPTK HPT
Sbjct: 221 TTDCPTKVCRYGFHPT 236
>UniRef50_A2QKS5 Cluster: Putative uncharacterized protein; n=1;
Aspergillus niger|Rep: Putative uncharacterized protein
- Aspergillus niger
Length = 329
Score = 33.5 bits (73), Expect = 7.1
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = -3
Query: 811 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSP-TSNPHAPTGATSSSLNTLL 644
S++ + ++ ++L P++L ASP +T +T T+SP TS P + ATS L +L
Sbjct: 39 SNSSSPRTMHIRLPPLMLPGASPRLSTLEPFTTTTSPSTSFPSPSSSATSDPLADIL 95
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 836,055,431
Number of Sequences: 1657284
Number of extensions: 17097985
Number of successful extensions: 45312
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 43377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45260
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -