Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e14
         (797 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY928182-1|AAX22219.1|  335|Anopheles gambiae phenoloxidase inhi...    24   4.7  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           24   6.3  
AY500851-1|AAS77205.1|  605|Anopheles gambiae G-protein coupled ...    23   8.3  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   8.3  

>AY928182-1|AAX22219.1|  335|Anopheles gambiae phenoloxidase
           inhibitor protein protein.
          Length = 335

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 417 TCRQEGCTCWNSAQRSAFSYWTFCFQFVPVTPHSSAL 307
           TC   G  C    +  + +  TF ++ VP++P  SA+
Sbjct: 93  TCALNGEYCLTHMECCSGNCLTFSYKCVPLSPSDSAM 129


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 482 KHVR--RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 351
           KHV+  +   +LK  +VC+     +  +RVV  GI  SGL L +GP
Sbjct: 109 KHVKFCQFAFDLKCDSVCV---NPYHYERVVSPGIDLSGLTLQSGP 151


>AY500851-1|AAS77205.1|  605|Anopheles gambiae G-protein coupled
           receptor 3 protein.
          Length = 605

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 393 CWNSAQRSAFSYWTFCFQF-VPVT 325
           CW+ A++   + W+F   F +P+T
Sbjct: 337 CWSRARKLVAAAWSFSILFSLPIT 360


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 325 RNGHELKAKGPVTKSRPLGRIPTSTTLLPACL--PARR 432
           +N H    K P ++  P  R P S    P+C   PARR
Sbjct: 241 KNAHASIRKIPPSRRNPRRRSPRSGGRWPSCRSPPARR 278


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 855,580
Number of Sequences: 2352
Number of extensions: 18159
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83992206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)