Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e11
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.38 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   2.7  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    26   2.7  
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    25   3.5  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   4.7  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   4.7  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   6.1  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   6.1  
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   6.1  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   6.1  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    24   8.1  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    24   8.1  

>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 149 IVQCSALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARNPIKLFVFLS-YSQPLFVFER 325
           +VQ +A+    FT ++  +  SI  + ++ S Y F L R  I +    + +S   ++F  
Sbjct: 125 LVQGAAMKIFSFT-FQTALPISIAIIWHVISTYGFALYRQRIVVGKHAAHFSLDHWIFVV 183

Query: 326 QYYKIVTFYIIHILSQIL 379
           +YY  + FY+ +++   L
Sbjct: 184 EYYAPIVFYVFNLMGFFL 201


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 349 KGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYN 215
           +GH  ++     +E +  AKK  E ++  GE   +D SQ  +KY+
Sbjct: 523 EGHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQ-HEKYS 566


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 385 VEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKK 287
           +E  + QN+DN K +  I++   N+E L I K+
Sbjct: 25  LEDRIHQNIDNTKDYRVIII---NDESLNIEKE 54


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -2

Query: 412 KKEDGSMHI--VEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEI 254
           K+E G  ++   E  L + V     H F++   K  E     KK E  +W + EI
Sbjct: 49  KQEGGDYYLGKKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEI 103


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 233 LTSVYIFNLARNPIKLFVFLSYSQPLFVFERQYYKIVTFYIIHILSQILFDNV-HAAVL 406
           +T + I    RN  +L+   S  QPL  F+R    +  F+ + I S++  D + HA ++
Sbjct: 378 ITIMVIIIFLRNLAELYTTSSLDQPLLTFKRLKTLLAPFFWV-IGSELFVDWLKHAFII 435


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 340 CDLLHYPHSESNTVRQCACC 399
           CD ++ P +E  T+ QC  C
Sbjct: 125 CDTVYNPETEEGTMFQCILC 144


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = -2

Query: 409 KEDGSMHIVEQYLTQNVDNVKGHNFIV-LSFKNEERLTIAKKNEEFYWISGE---IKDVD 242
           K+      +   +   +  VK + F +    KN +++++     +F  + G    ++++D
Sbjct: 53  KQQDFFRFLSSKVLAKIGKVKENGFYMPFEEKNGKKMSLGLVFADFENVDGADLCVQELD 112

Query: 241 ASQVIQKYNRFKHHMFVISKVNRRE 167
             Q++      K+H FV+ K+N+ E
Sbjct: 113 GKQIL------KNHTFVVRKLNQLE 131


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 367 QNVDNVKGHNFIVLSFKNEE---RLTIAKKNEEFYWISGEIKDVD 242
           +N+DNVK   ++ LSF N +    +   K  E  +++   I+ ++
Sbjct: 98  ENLDNVKNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIE 142


>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 139

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 79  EQKLNCKYKKIEFN*LYIYFEFN 11
           ++KL    ++I FN +Y+Y  F+
Sbjct: 100 QEKLKAPRRRISFNRVYVYINFS 122


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 230 YLTSVYIFNLARNPIKLFVFLSYSQPLFVFERQYYKIVTFYIIH 361
           Y+TS Y F++  NP  L +  S+ +  +V  R     +    IH
Sbjct: 129 YVTS-YFFSIKNNPFALLLISSHEKMNYVHRRLSQYAIMIGAIH 171


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 397 SMHIVEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDAS 236
           ++ I+ Q  ++    +K ++  + S K   RL     N+E YWI+ EIK +  S
Sbjct: 311 ALSIISQDKSRPKKGLKSNH--ISSLKPHYRL-FETNNKESYWIAREIKRIVGS 361


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 352 VKGHNFIVLSFKNEERLTIAKKNEE 278
           V+G   +VLS K + RL ++++N+E
Sbjct: 531 VQGAMAVVLSRKEQNRLMLSQENDE 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,427,630
Number of Sequences: 5004
Number of extensions: 25047
Number of successful extensions: 87
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)