Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e11
(413 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ459772-1|CAD30834.1| 1478|Drosophila melanogaster Fanconi anem... 31 0.46
AE014297-2866|AAN13836.2| 1478|Drosophila melanogaster CG17269-P... 31 0.46
AY089558-1|AAL90296.1| 1063|Drosophila melanogaster LD45706p pro... 28 5.6
AJ249178-1|CAB53566.1| 1063|Drosophila melanogaster chromosomal ... 28 5.6
AF190557-1|AAF01341.1| 1063|Drosophila melanogaster chromosomal ... 28 5.6
AF179361-2|AAD55780.1| 1063|Drosophila melanogaster embargoed pr... 28 5.6
AF179360-1|AAD55778.1| 1063|Drosophila melanogaster embargoed pr... 28 5.6
AE014134-1501|AAG22423.2| 1063|Drosophila melanogaster CG13387-P... 28 5.6
AY060374-1|AAL25413.1| 464|Drosophila melanogaster LD24627p pro... 27 7.4
AE014297-3468|AAN13983.1| 464|Drosophila melanogaster CG31133-P... 27 7.4
>AJ459772-1|CAD30834.1| 1478|Drosophila melanogaster Fanconi anemia
complementationgroup D2 protein protein.
Length = 1478
Score = 31.5 bits (68), Expect = 0.46
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 161 SALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARNPIKL-FVFLSYSQPLFVFERQYYK 337
+++ + FT + ++L +I +N S+YI N+ R IKL + +S + + RQ+Y+
Sbjct: 403 ASVPAAEFTSFDMILLLLLIHVNEDNSLYIENILRRRIKLEHITVSILEEI----RQHYR 458
Query: 338 IVTFYIIHILSQILFD 385
+ I L IL D
Sbjct: 459 HILEQHITTLMNILHD 474
>AE014297-2866|AAN13836.2| 1478|Drosophila melanogaster CG17269-PA
protein.
Length = 1478
Score = 31.5 bits (68), Expect = 0.46
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +2
Query: 161 SALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARNPIKL-FVFLSYSQPLFVFERQYYK 337
+++ + FT + ++L +I +N S+YI N+ R IKL + +S + + RQ+Y+
Sbjct: 403 ASVPAAEFTSFDMILLLLLIHVNEDNSLYIENILRRRIKLEHITVSILEEI----RQHYR 458
Query: 338 IVTFYIIHILSQILFD 385
+ I L IL D
Sbjct: 459 HILEQHITTLMNILHD 474
>AY089558-1|AAL90296.1| 1063|Drosophila melanogaster LD45706p
protein.
Length = 1063
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 134 QF*QIIVQCS-ALSSVHFTDYKHVMLKSII-FLNYLTSVYIFNLARNPIKLFVFLSYSQP 307
+F QI CS L + HV L++++ FLN++ YIF + +F FLS P
Sbjct: 198 EFSQIFTLCSFVLENSMNAALIHVTLETLLRFLNWIPLGYIFETQQIETLIFKFLSV--P 255
Query: 308 LF 313
+F
Sbjct: 256 MF 257
>AJ249178-1|CAB53566.1| 1063|Drosophila melanogaster chromosomal
region maintenance1 protein protein.
Length = 1063
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 134 QF*QIIVQCS-ALSSVHFTDYKHVMLKSII-FLNYLTSVYIFNLARNPIKLFVFLSYSQP 307
+F QI CS L + HV L++++ FLN++ YIF + +F FLS P
Sbjct: 198 EFSQIFTLCSFVLENSMNAALIHVTLETLLRFLNWIPLGYIFETQQIETLIFKFLSV--P 255
Query: 308 LF 313
+F
Sbjct: 256 MF 257
>AF190557-1|AAF01341.1| 1063|Drosophila melanogaster chromosomal
region maintenanceprotein CRM1 protein.
Length = 1063
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 134 QF*QIIVQCS-ALSSVHFTDYKHVMLKSII-FLNYLTSVYIFNLARNPIKLFVFLSYSQP 307
+F QI CS L + HV L++++ FLN++ YIF + +F FLS P
Sbjct: 198 EFSQIFTLCSFVLENSMNAALIHVTLETLLRFLNWIPLGYIFETQQIETLIFKFLSV--P 255
Query: 308 LF 313
+F
Sbjct: 256 MF 257
>AF179361-2|AAD55780.1| 1063|Drosophila melanogaster embargoed
protein.
Length = 1063
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 134 QF*QIIVQCS-ALSSVHFTDYKHVMLKSII-FLNYLTSVYIFNLARNPIKLFVFLSYSQP 307
+F QI CS L + HV L++++ FLN++ YIF + +F FLS P
Sbjct: 198 EFSQIFTLCSFVLENSMNAALIHVTLETLLRFLNWIPLGYIFETQQIETLIFKFLSV--P 255
Query: 308 LF 313
+F
Sbjct: 256 MF 257
>AF179360-1|AAD55778.1| 1063|Drosophila melanogaster embargoed
protein.
Length = 1063
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 134 QF*QIIVQCS-ALSSVHFTDYKHVMLKSII-FLNYLTSVYIFNLARNPIKLFVFLSYSQP 307
+F QI CS L + HV L++++ FLN++ YIF + +F FLS P
Sbjct: 198 EFSQIFTLCSFVLENSMNAALIHVTLETLLRFLNWIPLGYIFETQQIETLIFKFLSV--P 255
Query: 308 LF 313
+F
Sbjct: 256 MF 257
>AE014134-1501|AAG22423.2| 1063|Drosophila melanogaster CG13387-PA
protein.
Length = 1063
Score = 27.9 bits (59), Expect = 5.6
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 134 QF*QIIVQCS-ALSSVHFTDYKHVMLKSII-FLNYLTSVYIFNLARNPIKLFVFLSYSQP 307
+F QI CS L + HV L++++ FLN++ YIF + +F FLS P
Sbjct: 198 EFSQIFTLCSFVLENSMNAALIHVTLETLLRFLNWIPLGYIFETQQIETLIFKFLSV--P 255
Query: 308 LF 313
+F
Sbjct: 256 MF 257
>AY060374-1|AAL25413.1| 464|Drosophila melanogaster LD24627p
protein.
Length = 464
Score = 27.5 bits (58), Expect = 7.4
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -2
Query: 409 KEDGSMHIVEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQV 230
K+ S +I Y+T + N N++ L + T ++ IS D+ V
Sbjct: 15 KKTCSRNISALYITGDKAN---ENYVTLQPYMDFNKTFGERQFLEQSISSRGLDIRLETV 71
Query: 229 IQKYNRFKHHMFVISKV-NRRESTT 158
+ KY ++K H +SKV RE T
Sbjct: 72 LSKYEKYKTHHAQLSKVAEERERVT 96
>AE014297-3468|AAN13983.1| 464|Drosophila melanogaster CG31133-PA
protein.
Length = 464
Score = 27.5 bits (58), Expect = 7.4
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -2
Query: 409 KEDGSMHIVEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQV 230
K+ S +I Y+T + N N++ L + T ++ IS D+ V
Sbjct: 15 KKTCSRNISALYITGDKAN---ENYVTLQPYMDFNKTFGERQFLEQSISSRGLDIRLETV 71
Query: 229 IQKYNRFKHHMFVISKV-NRRESTT 158
+ KY ++K H +SKV RE T
Sbjct: 72 LSKYEKYKTHHAQLSKVAEERERVT 96
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,733,114
Number of Sequences: 53049
Number of extensions: 236004
Number of successful extensions: 647
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1230182214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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