Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e11
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical pr...    31   0.25 
AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical ...    30   0.58 
Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    28   2.3  
U29082-8|AAA68405.1|  228|Caenorhabditis elegans Sex muscle abno...    28   3.1  
S88446-1|AAB21850.1|  228|Caenorhabditis elegans sem-5 protein.        28   3.1  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U39993-3|AAK72060.1|  728|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U49947-2|AAA93421.2| 1032|Caenorhabditis elegans Guanylyl cyclas...    27   7.1  
U41279-2|AAK31425.2|  145|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    26   9.4  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    26   9.4  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    26   9.4  

>U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical
           protein T20F7.1 protein.
          Length = 773

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = -2

Query: 409 KEDGSMHIVEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGE---IKDVDA 239
           +EDG+  + +QY  +N + V  H        NEE LT  K++E  Y + G    ++ +  
Sbjct: 70  EEDGTYDMNQQYGVENQEYVDAHYINT----NEEYLT-GKEHEMVYQLFGNTATVEPIST 124

Query: 238 SQVIQKYNRFKH 203
            + ++KY   KH
Sbjct: 125 EKRLEKYPELKH 136


>AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical
           protein Y32B12B.7 protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +2

Query: 212 SIIFLNYLTSVYIFNLARNPIKLFVFLSYSQPLFVFERQYYKIVTFYIIHILSQILFDNV 391
           SII   +L  V +F+L     K+   L+Y  PLF+       +  F+ +   +Q+ +   
Sbjct: 126 SIILFCFLRVVLLFSLDHVTEKIGRLLAYLSPLFIIFAFLLALPRFFTLSTCAQLGWPFP 185

Query: 392 HAAVLL 409
           H A+++
Sbjct: 186 HGAIII 191


>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +2

Query: 215 IIFLNYLTSVYIFNLARNPIKLFVFL 292
           I+F+ ++TS++IF++ +  I L +FL
Sbjct: 98  IMFIFFMTSIFIFHILQQTIHLLLFL 123


>U29082-8|AAA68405.1|  228|Caenorhabditis elegans Sex muscle
           abnormal protein 5 protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 328 LSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHMFVISKVNRRES 164
           LSFK    L +  K+E+ +W   E+ D +   +   Y R     + + K+ R ++
Sbjct: 17  LSFKRGNTLKVLNKDEDPHWYKAEL-DGNEGFIPSNYIRMTECNWYLGKITRNDA 70


>S88446-1|AAB21850.1|  228|Caenorhabditis elegans sem-5 protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 328 LSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHMFVISKVNRRES 164
           LSFK    L +  K+E+ +W   E+ D +   +   Y R     + + K+ R ++
Sbjct: 17  LSFKRGNTLKVLNKDEDPHWYKAEL-DGNEGFIPSNYIRMTECNWYLGKITRNDA 70


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 395 HAHCRTVFD--SECG*CKRSQFYSIVFQKRRAVDYS*EKRRVLLDFW 261
           H+ C   FD  +EC  CK     S  +Q R+ V++  E   ++++ W
Sbjct: 56  HSLCSQCFDKFTECPICKEPLVRSENYQARKIVEHFKENPTMIIEKW 102


>Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.10 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
 Frame = +2

Query: 215 IIFLNYLTSVYIFNLARNPIKLFVFLSYSQPLFVFERQYYKIVTFYIIH-ILSQILFD-- 385
           I +LN+L  + IF   + P+ L + L+Y +  F  +  Y  ++    I+ +L+QI  D  
Sbjct: 19  ICYLNFLLLISIFWRKKIPVNLHMMLTYCR--FGVDLVYTVVILILKIYFLLTQISTDFI 76

Query: 386 --NVHAAVLL 409
             NVH ++++
Sbjct: 77  IKNVHFSLVI 86


>U39993-3|AAK72060.1|  728|Caenorhabditis elegans Hypothetical
           protein F47E1.4 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 158 CSALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARN 268
           CS   S H   + H++   + F++ L+ +Y++  A N
Sbjct: 671 CSIYDSDHLRIWMHLLYVGVRFISLLSDIYVWKNAGN 707


>U49947-2|AAA93421.2| 1032|Caenorhabditis elegans Guanylyl cyclase
            protein 11 protein.
          Length = 1032

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 319  KNEERLTIAKKNEEF-YWISGEIKDVDASQVIQKYNRFKHHMFVISKVNR 173
            +  E++ +  K E   YW++   KD   ++++    +F H   +I K N+
Sbjct: 980  EQREKIVLKNKLEVMTYWMNDYSKDARLARLVAHQEKFPHLEHLIHKFNK 1029


>U41279-2|AAK31425.2|  145|Caenorhabditis elegans Hypothetical
           protein C17C3.9 protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 84  NVIASDNGTRPCNIKANNFNKLLCNVV 164
           + I  +  T PC IK  N  + LCNVV
Sbjct: 84  STIPDEYRTHPCVIKFQNCIRALCNVV 110


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 209 KSIIFLNYLTSVYIFNLARNPIKLFVFLSYSQ 304
           +  IFL ++ S+  F L +N IKL +  S  Q
Sbjct: 188 RPFIFLRFIRSIVRFKLPKNRIKLIIKRSSQQ 219


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 209 KSIIFLNYLTSVYIFNLARNPIKLFVFLSYSQ 304
           +  IFL ++ S+  F L +N IKL +  S  Q
Sbjct: 166 RPFIFLRFIRSIVRFKLPKNRIKLIIKRSSQQ 197


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 209 KSIIFLNYLTSVYIFNLARNPIKLFVFLSYSQ 304
           +  IFL ++ S+  F L +N IKL +  S  Q
Sbjct: 188 RPFIFLRFIRSIVRFKLPKNRIKLIIKRSSQQ 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,955,660
Number of Sequences: 27780
Number of extensions: 140880
Number of successful extensions: 407
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)