Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e11
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   2.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   5.5  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   5.5  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   5.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.5  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 290 LSYSQPLFVFERQYYKIVTFYIIHILS 370
           +S+  PLFV    YYKI    +I   S
Sbjct: 213 ISFYLPLFVMVFTYYKIYRAAVIQTKS 239


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 120 NIKANNFNKLLCNVVLSLRFTL 185
           N   NN+ KL CN    L + +
Sbjct: 90  NYNNNNYKKLYCNNYKKLYYNI 111


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 120 NIKANNFNKLLCNVVLSLRFTL 185
           N   NN+ KL CN    L + +
Sbjct: 90  NYNNNNYKKLYCNNYKKLYYNI 111


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 120 NIKANNFNKLLCNVVLSLRFTL 185
           N   NN+ KL CN    L + +
Sbjct: 90  NYNNNNYKKLYCNNYRKLYYNI 111


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 293 SYSQPLFVFERQYYKI 340
           S+  PLFV  + YYKI
Sbjct: 210 SFYIPLFVMIQVYYKI 225


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 129 ANNFNKLLCNVVLSLRFTLL 188
           A +  KLLCNV     + LL
Sbjct: 102 ARSLEKLLCNVEAEENYNLL 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,091
Number of Sequences: 438
Number of extensions: 1555
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)