Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e06
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   197   6e-52
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   197   6e-52
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    38   0.001
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    26   3.0  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   4.0  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.3  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   5.3  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    25   5.3  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    24   9.3  
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    24   9.3  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    24   9.3  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  197 bits (481), Expect = 6e-52
 Identities = 91/143 (63%), Positives = 114/143 (79%)
 Frame = -3

Query: 446 SKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 267
           +++  Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G
Sbjct: 3   TELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVG 59

Query: 266 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 87
            VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD
Sbjct: 60  QVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGD 118

Query: 86  IVTIGECRPLSKTVRFNVLKVSK 18
           +VT+G+CRPLSKTVRFNVL+V K
Sbjct: 119 VVTVGQCRPLSKTVRFNVLRVVK 141


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  197 bits (481), Expect = 6e-52
 Identities = 91/143 (63%), Positives = 114/143 (79%)
 Frame = -3

Query: 446 SKMADQTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 267
           +++  Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G
Sbjct: 3   TELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVG 59

Query: 266 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 87
            VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +  GD
Sbjct: 60  QVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGD 118

Query: 86  IVTIGECRPLSKTVRFNVLKVSK 18
           +VT+G+CRPLSKTVRFNVL+V K
Sbjct: 119 VVTVGQCRPLSKTVRFNVLRVVK 141


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -3

Query: 236 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 57
           G+V    M +T  +R     + P   ++  +++N  V       +  +GD VTI  CRP 
Sbjct: 7   GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63

Query: 56  SKTVRFNVLKV 24
           S T RF ++K+
Sbjct: 64  SATKRFEIIKI 74


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 177 VKVIAADHDSSLHLHFLNDAGEDAAADRNVTSEGTL 284
           V   +  HDS+LH +FLN   +D   +   T+E  L
Sbjct: 24  VLAFSEHHDSALHSYFLNARVKDVILESLRTTEEKL 59


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 101 VEIGDIVTIGECRPLSKTVRFNVLKVS 21
           V +GDIVTI  C  +    R +VL ++
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVLPLA 140


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 195 DHDSSLHL--HFLNDAGEDAAADRNVTSEGTLLVNVGT 302
           +H   +H+  H L D  + +  DRN  +EGT   N  T
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNT 165


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 299 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 397
           YP    W+     +++    CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -3

Query: 416 FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG-TYIDKKCPFTGNVSIRGRIL 240
           + K  T F N+ G  K   M   K  G+       A  G T+ID   P      I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221

Query: 239 TGV 231
           TGV
Sbjct: 222 TGV 224


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 386 RKGGMKRKDMRHHKNVGLGFKTPREAIEG 300
           R G     D++  +N+G+ F+TP +   G
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQFFLG 222


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 107 RDVEIGDIVTIGECRPLSKTV-RFNVLKVSKGK 12
           +D+ + D +TIG  +PL  T  RF   +  K +
Sbjct: 32  KDISLVDYITIGNGQPLPHTAGRFQTKRFRKAR 64


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 107 RDVEIGDIVTIGECRPLSKTV-RFNVLKVSKGK 12
           +D+ + D +TIG  +PL  T  RF   +  K +
Sbjct: 32  KDISLVDYITIGNGQPLPHTAGRFQTKRFRKAR 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,853
Number of Sequences: 5004
Number of extensions: 37405
Number of successful extensions: 108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)