Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e04
         (773 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.51 
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    24   1.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.7  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.7  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   4.7  
AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    22   6.3  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    22   6.3  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    22   6.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 246 LCRYSFVFCFVIKIRRRSKYYALLYFFHH 332
           LC Y F + F+I +     YYA + F  H
Sbjct: 98  LCTYYFYYAFIILLCVYYFYYAFIIFTVH 126



 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 207 TPHDLPNLVAAI*LCRYSFVFCFVIKIRRRSKYYALLYFFH-HCRWC 344
           T H L   V  I LC Y F + F++          + YF++ H  +C
Sbjct: 223 TIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLLFC 269


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 708 MIDLSSAPLQPPLVDLPAEMLPPPAPSLSNVLSELK 601
           +I LS  P  PP+ D+ +  +PP   S  N+  +L+
Sbjct: 33  LISLSYLP-GPPVNDIISGNIPPLYTSAENIFKQLR 67


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = -3

Query: 495 INRRRVAMAKSSSEATSNDEGWDDGGNNRPNAPDVKYVQALFNVFTSSQLYTNDSDEKNT 316
           I++ ++   +SS +A     G    GNN+P      +V A+       Q +++  +  N 
Sbjct: 508 ISQEQIISWRSSDDAKGGGGG-SGSGNNQPPGGPSSHVSAVLTCKVCDQAFSSLKELSNH 566

Query: 315 KAHN 304
              N
Sbjct: 567 MVKN 570


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 273 FVIKIRRRSKYY 308
           F IKIRRR+ YY
Sbjct: 203 FTIKIRRRTLYY 214


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 273 FVIKIRRRSKYY 308
           F IKIRRR+ YY
Sbjct: 203 FTIKIRRRTLYY 214


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 273 FVIKIRRRSKYY 308
           F IKIRRR+ YY
Sbjct: 203 FTIKIRRRTLYY 214


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 273 FVIKIRRRSKYY 308
           F IKIRRR+ YY
Sbjct: 203 FTIKIRRRTLYY 214


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 273 FVIKIRRRSKYY 308
           F IKIRRR+ YY
Sbjct: 203 FTIKIRRRTLYY 214


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 387 YVQALFNVFTSSQLYTN 337
           Y  A F +FTS+ +YTN
Sbjct: 173 YTLAKFMIFTSTCIYTN 189


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 397 GRVRPIIAAVVPTLVVRSCFRRRFCHSHTTPIN 495
           G++ PI   ++ T+ V   F+RR  +   +PI+
Sbjct: 18  GKLWPISIVLIYTVGVVYSFKRRIFYQDESPIS 50


>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 212

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 36  CNL*GGMLERKSND 77
           C L  G+LER+SND
Sbjct: 90  CFLLDGILERRSND 103


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 36  CNL*GGMLERKSND 77
           C L  G+LER+SND
Sbjct: 323 CFLLDGILERRSND 336


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 36  CNL*GGMLERKSND 77
           C L  G+LER+SND
Sbjct: 323 CFLLDGILERRSND 336


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 599 DFNSDNTLESDGAGGGNISAGKSTNGG 679
           DF  +N  +S G  GG     +   GG
Sbjct: 82  DFLGENNDDSGGGRGGGRDGDRGDGGG 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,047
Number of Sequences: 336
Number of extensions: 3567
Number of successful extensions: 21
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)