Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e04
         (773 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    27   0.64 
AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakini...    26   1.5  
AJ297930-1|CAC35450.1|  104|Anopheles gambiae hypothetical prote...    26   1.5  
AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeot...    24   6.0  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    23   7.9  

>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 27.1 bits (57), Expect = 0.64
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -3

Query: 657  AEMLPPPAPS-LSNVLSEL-KSGTVRLKPAQKRPQSEIIPKNSTTKNLIADVLVDTINRR 484
            AE LPPP PS  +    E+ +    RL+  Q+  ++E+        +  +D   D +  R
Sbjct: 1075 AERLPPPPPSPRTERRREVNRLAVARLRERQRAARAEMHGAYQPAPSNDSDDDDDDVENR 1134

Query: 483  RVAMAKSSSEA 451
            +   A S+SEA
Sbjct: 1135 QATNAASTSEA 1145


>AY347952-1|AAR28375.1|  634|Anopheles gambiae putative sulfakinin
           GPCR protein.
          Length = 634

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 605 NSDNTLESDGAGGGNISAGKSTNGGCNGAD 694
           N+ N     GAG G+ S G  ++G  NG++
Sbjct: 397 NTINKSNFSGAGSGSSSNGAGSSGSSNGSN 426



 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 626 SDGAGGGNISAGKSTNGGCNGA 691
           S+GAG    S G S  GGCNG+
Sbjct: 413 SNGAGSSGSSNG-SNGGGCNGS 433


>AJ297930-1|CAC35450.1|  104|Anopheles gambiae hypothetical protein
           protein.
          Length = 104

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 388 FNIGRVRPIIAAVVPT-LVVRSCFRRRFCHSHTTP 489
           FN G + P  A + PT   + SC    FC +HT P
Sbjct: 69  FN-GNIYPAGAKLAPTEQEIHSCSPACFCSNHTAP 102


>AF080566-1|AAC31946.1|  308|Anopheles gambiae abdominal-A homeotic
           protein protein.
          Length = 308

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 608 SDNTLESDGAGGGNISAGKSTNGGCNG 688
           S  T    G GGG   +G + +GG +G
Sbjct: 243 SQQTSNGGGTGGGTGGSGGAGSGGSSG 269


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 17/88 (19%), Positives = 34/88 (38%)
 Frame = -3

Query: 507 LVDTINRRRVAMAKSSSEATSNDEGWDDGGNNRPNAPDVKYVQALFNVFTSSQLYTNDSD 328
           +++  N       +  S A+    G +DG N R   P++    +  +V  S        +
Sbjct: 139 VINNNNNNSTTSPQDLSTASGGSSGANDGNNGR---PEISPKLSPGSVVESVSRSLKSGN 195

Query: 327 EKNTKAHNILNDVESLLQNKTQTNIDKA 244
                + +  N+  S + N+ Q N+  A
Sbjct: 196 PSTAVSSSSTNNNTSNISNRNQVNLPLA 223


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,184
Number of Sequences: 2352
Number of extensions: 15073
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80665782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)