Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e01
         (298 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O96233 Cluster: Putative uncharacterized protein PFB070...    34   0.55 
UniRef50_Q86G82 Cluster: DNA mismatch repair enzyme; n=5; Plasmo...    33   0.96 
UniRef50_UPI00006CF362 Cluster: hypothetical protein TTHERM_0006...    32   2.9  
UniRef50_Q8C3Z9 Cluster: 2 days neonate thymus thymic cells cDNA...    31   5.1  
UniRef50_Q6LF60 Cluster: Putative uncharacterized protein; n=1; ...    31   5.1  
UniRef50_Q4A7L2 Cluster: Putative uncharacterized protein; n=4; ...    31   6.7  

>UniRef50_O96233 Cluster: Putative uncharacterized protein PFB0700c;
           n=2; Plasmodium|Rep: Putative uncharacterized protein
           PFB0700c - Plasmodium falciparum (isolate 3D7)
          Length = 972

 Score = 34.3 bits (75), Expect = 0.55
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = -3

Query: 296 RNDVICFSKLNSLYE*NSTCKTQSRDDVICFSK----LNLRNDVICLNSLYE*NSTCKTQ 129
           ++D+IC +K +++          ++DD IC +K     N ++D+IC N     N      
Sbjct: 122 KDDIICNNKDDTMCNNKDDTICNNKDDTICNNKDDIICNNKDDIICNN-----NDDTICN 176

Query: 128 SRDDVICFSKLNLRNDVIC 72
           ++DD IC    N  +D IC
Sbjct: 177 NKDDTIC----NNNDDTIC 191


>UniRef50_Q86G82 Cluster: DNA mismatch repair enzyme; n=5;
           Plasmodium|Rep: DNA mismatch repair enzyme - Plasmodium
           falciparum
          Length = 1016

 Score = 33.5 bits (73), Expect = 0.96
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -3

Query: 248 NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVIC 72
           N TC     D+ I  + L   N++ C N  ++ N TC     D+ I  + L   N++ C
Sbjct: 287 NMTCNNLPHDNNITCNNLPHDNNITCNNIPHDNNITCNNLPHDNNITCNNLQHDNNITC 345



 Score = 32.3 bits (70), Expect = 2.2
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -3

Query: 266 NSLYE*NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLR 87
           N  ++ N TC     D+ I  + +   N++ C N  ++ N TC     D+ I  + L   
Sbjct: 292 NLPHDNNITCNNLPHDNNITCNNIPHDNNITCNNLPHDNNITCNNLQHDNNITCNNLPHD 351

Query: 86  NDVIC 72
           N++ C
Sbjct: 352 NNITC 356


>UniRef50_UPI00006CF362 Cluster: hypothetical protein TTHERM_00069700;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00069700 - Tetrahymena thermophila SB210
          Length = 1802

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -3

Query: 233  TQSRDDVICFSKLNLRNDVICLNSLY 156
            +QS DD++ FSK++  ND+I  NS Y
Sbjct: 1733 SQSDDDLVTFSKISNSNDIISTNSKY 1758


>UniRef50_Q8C3Z9 Cluster: 2 days neonate thymus thymic cells cDNA,
           RIKEN full-length enriched library, clone:C920008P08
           product:hypothetical protein, full insert sequence; n=1;
           Mus musculus|Rep: 2 days neonate thymus thymic cells
           cDNA, RIKEN full-length enriched library,
           clone:C920008P08 product:hypothetical protein, full
           insert sequence - Mus musculus (Mouse)
          Length = 136

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 209 CFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICFSKXELALASRILA 30
           CF   +L    +C+N L+   ST + Q     IC +   +++  +CF+     L S++LA
Sbjct: 66  CFVSGHLDEGAVCVNILHSSCSTLQGQLFFP-ICINSPRVKSSCLCFTTFPFYLVSKVLA 124


>UniRef50_Q6LF60 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 871

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -3

Query: 248 NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRD--DVICFSKL--NLRN 84
           NS+    S+D++IC + +N   D +  N   E N   + +  +  D+IC  K   NL+N
Sbjct: 74  NSSNNNVSKDNIICINNMNEDTDKLLKNKKDECNFNLEKEDNEIKDIICDKKFDDNLKN 132


>UniRef50_Q4A7L2 Cluster: Putative uncharacterized protein; n=4;
           Mycoplasma hyopneumoniae|Rep: Putative uncharacterized
           protein - Mycoplasma hyopneumoniae (strain 7448)
          Length = 266

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 31  ARILLAKASSXFEKQMTSFLKFSFEKQMTSSLDCVLHVEFYS*SEFKQMTSFLKFSFEK 207
           A +  A A++     MT F+  SF+ Q     D     EF + SE++++  FL+ +FE+
Sbjct: 74  ATLPFAAAAALQSSIMTFFVSESFKAQKAIGEDLKRIKEFKNSSEYQKINKFLQMNFEE 132


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,001,355
Number of Sequences: 1657284
Number of extensions: 3199388
Number of successful extensions: 5337
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5301
length of database: 575,637,011
effective HSP length: 75
effective length of database: 451,340,711
effective search space used: 10380836353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)