Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e01
         (298 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   2.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   2.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   2.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   2.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   2.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   2.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   2.8  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    20   6.5  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   IIPWIVVLHARILLAKASSXFEKQMTSFLKF 96
           I PW+  +H       A+   ++Q TS+ ++
Sbjct: 200 IYPWMKRVHLGQSTVNANGETKRQRTSYTRY 230


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   IIPWIVVLHARILLAKASSXFEKQMTSFLKF 96
           I PW+  +H       A+   ++Q TS+ ++
Sbjct: 200 IYPWMKRVHLGQSTVNANGETKRQRTSYTRY 230


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   IIPWIVVLHARILLAKASSXFEKQMTSFLKF 96
           I PW+  +H       A+   ++Q TS+ ++
Sbjct: 200 IYPWMKRVHLGQSTVNANGETKRQRTSYTRY 230


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   IIPWIVVLHARILLAKASSXFEKQMTSFLKF 96
           I PW+  +H       A+   ++Q TS+ ++
Sbjct: 200 IYPWMKRVHLGQSTVNANGETKRQRTSYTRY 230


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   IIPWIVVLHARILLAKASSXFEKQMTSFLKF 96
           I PW+  +H       A+   ++Q TS+ ++
Sbjct: 156 IYPWMKRVHLGQSTVNANGETKRQRTSYTRY 186


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   IIPWIVVLHARILLAKASSXFEKQMTSFLKF 96
           I PW+  +H       A+   ++Q TS+ ++
Sbjct: 200 IYPWMKRVHLGQSTVNANGETKRQRTSYTRY 230


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   IIPWIVVLHARILLAKASSXFEKQMTSFLKF 96
           I PW+  +H       A+   ++Q TS+ ++
Sbjct: 200 IYPWMKRVHLGQSTVNANGETKRQRTSYTRY 230


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 5   SSPGLWFYTLEF 40
           S+P LW YT+ F
Sbjct: 332 SNPPLWPYTMYF 343


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,831
Number of Sequences: 336
Number of extensions: 924
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5322850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)