Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e01
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    25   3.1  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    25   3.1  
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    24   5.5  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    23   7.3  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   9.6  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    23   9.6  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 25  LHARILLAKASSXFEKQMTSFLKFSFEKQMTSSLDCVLHVEFYS 156
           +HA +  A      EK + +F+K  F+K+ + +  C++   F S
Sbjct: 18  IHAAVQ-AMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGS 60


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -3

Query: 242 TCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLN 93
           T + ++ + + CF        V  L  LYE  S+ +TQ +  ++    +N
Sbjct: 52  TLEKEAPEGIDCFLYATSWEKVKSLKELYEHISSWRTQGKQHIVMIDTIN 101


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 37  ILLAKASSXFEKQMTSFLKFSFEKQMTSSLDCVLHVEFYS*SEFKQ 174
           +++A A   F + +       FEK M  + + V  V +Y    FK+
Sbjct: 101 VVVANAGMPFRRSVLDSPPHEFEKVMNINTNSVYRVAYYMGKIFKK 146


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 31  ARILLAKASSXFEKQMTSFLKFSFEKQMTSSLD 129
           AR L A   S  EK+ T  +KFS +++  S ++
Sbjct: 522 ARGLTAAEESEEEKEHTKGIKFSSDEESLSDME 554


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 64  FEKQMTSFLKFSFEKQMTSSLDCVLHV 144
           FEK  TSFLK  F   +  SL   +++
Sbjct: 38  FEKYETSFLKSLFNGNLGLSLPSAINI 64


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 19  VVLHARILLAKASSXFEKQMTSFLKFSFEKQMTS 120
           V + ARI   KA   F     S +  S EKQ+T+
Sbjct: 412 VAVRARIEGIKAHEMFLNNRVSEINSSLEKQLTT 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,014,823
Number of Sequences: 5004
Number of extensions: 16133
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)